Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2179 ATGAACGGTGAAATCTTCTTACACACGGCCACAACCACCACCACCACCGCCACATTTCTTCCAGTTCACCATGCACCCGAATCGCACGACCCATCATGCTTCCCATTTCAGCCTCCTCGTGCCTCAAGCAACGAAACGACCCTCGAAGGAATCGCAGCGGTCGTCGGAGAACGCGTCCTCTACGGACCCAATCACCGTCAACCGGTGACCTCTTCGGGTTCGGAGGCGGGTACGCCGAAGAAGAAGGCGGCGGAGAAGAAGACCGGCGCGAGCACGAGCTACAGAGGAGTGAGGAAGAGGCCCTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGCCGGTGCCGCCACTGGCTGGGTACGTTCGACACGGCTGAGGAGGCGGCGCGTGCTTACGACGCGGCCGCGAGGCGCCTGAGAGGCTCCAAGGCTCGGACCAACTTCAAAATACCTTCGGTTTTGCCGCTGCTTTCGCCGCCGCAACCGAACTCGGAGATGAATCCGGTCACCGGAGTTACTGGTAAGCCGAAAACTACGCGCAAGGGAAGTAAGAAGTGCTCTGTGGATGTGGTTACTTCGGTGGAACAATTGTTCAGTGGGGTCCCTGCAGTTCGAAGAGGAAGAGAAATTCATGTTCATAACAGCAATGTGGAGGTGAAGTTGAAGCTTGGTGGTGCTGGTAGAAACAGTACTAGAATGGTGATGTAG 711 0.5767 MNGEIFLHTATTTTTTATFLPVHHAPESHDPSCFPFQPPRASSNETTLEGIAAVVGERVLYGPNHRQPVTSSGSEAGTPKKKAAEKKTGASTSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPLLSPPQPNSEMNPVTGVTGKPKTTRKGSKKCSVDVVTSVEQLFSGVPAVRRGREIHVHNSNVEVKLKLGGAGRNSTRMVM* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2179 236 CDD AP2 94 151 IPR001471 GO:0003700|GO:0006355
Lja3g2179 236 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700|GO:0006355
Lja3g2179 236 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Lja3g2179 236 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 39 205 - -
Lja3g2179 236 MobiDBLite consensus disorder prediction 154 185 - -
Lja3g2179 236 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Lja3g2179 236 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Lja3g2179 236 SUPERFAMILY DNA-binding domain 93 150 IPR016177 GO:0003677
Lja3g2179 236 MobiDBLite consensus disorder prediction 164 178 - -
Lja3g2179 236 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Lja3g2179 236 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Lja3g2179 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 39 205 - -
Lja3g2179 236 MobiDBLite consensus disorder prediction 62 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2179 Lja-Chr3 25723648 25724358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2179 32 156 AP2-EREBP Transcription Factor Family AT1G80580 59.055 1.05e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g2179 AP2 7.1e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2179 3 25723648 25724358 Lja3g2179 3 25723648 25724358 ECH