Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2178 ATGGAGGAGTCATGGGAAAATTGGCACCTTCATCCGGAAATGGATTGCGATGATGATTATTTTGCAAACAAGTCAAACATGGAGGAGGATGAGGAGTTTCTGAGACAGATCCTACTTCAGGCACCGGCTTTTTCTTCTGAAAGTGAGAGCAATAACTCGCTCCACGCTTCTTCCACCGTCGCATCTGAAGAGATTATTGGGAACATGGTGAAAAGCCACAGTTCAAACTCCATAGTGTCATCTCAACAGGGTCCTAAAAAGCCACGTGGCTCGTCTTCTCCGAAGGCTTACATTTTGTCGTTTGATAACTCAACCATTATTCCAGCGAACCCTGAGGGGAAATTATTGGGTAGCAATAAGGGAAGTACTCGAGGTACTAAGCGTTGTTCTGATTCTTCTTCTGCTCTGCCCAATAAATTACAGCAAGTTCAGAACACTGAATCTGAGAAAACAAGGGCCAACAATCAAGGCACGAAGAGGGCCAGAACCACTTCTCAGACTATCGATCACATATTGGCAGAGAGGAAAAGGAGGCAGGAATTGACTGAGAGATTCATCGCACTTTCAGCAACCATTCCAGGCCTCAGCAAGACAGATAAGGCGTCTGTACTCAGAGCAGCGATCGATTACGTGAAACAACTCAAAGAACGTGTACAAGAACTAGAGAAACAAGAGAAGAAAAATGGTGTTGAAAAAGTGATTGTGATCAAGAAACCCGATCTACGTGGAAATGAAGACACCACAAACTCGGGTGATATAATTACTACAAGTTCTGATCATGATGACTGTAGTACAATCCTCCCTGAGATTGCTGCAAGAGCATTGGGGAAAGAGGTGCTCATTGAGATCCACTGCGAGAAAGAAAATGGCACAGAGCTCAAAATACTGGACCACCTTGAAAATCTTCACCTCTCTGTCAATGGTAGCAGCGTCTTGCCGTTTGGGAATTCCGCTCTTTCCGTTACTGTTATTGCTCAGATGGGTGACGCGTATGGAATGACAATGAATGATCTCGTGAATAGCCTCAGGCAATTGCTCTTGAAGTCCCAAATGAGCAGTGACAGTGATCCGTACTAG 1077 0.4475 MEESWENWHLHPEMDCDDDYFANKSNMEEDEEFLRQILLQAPAFSSESESNNSLHASSTVASEEIIGNMVKSHSSNSIVSSQQGPKKPRGSSSPKAYILSFDNSTIIPANPEGKLLGSNKGSTRGTKRCSDSSSALPNKLQQVQNTESEKTRANNQGTKRARTTSQTIDHILAERKRRQELTERFIALSATIPGLSKTDKASVLRAAIDYVKQLKERVQELEKQEKKNGVEKVIVIKKPDLRGNEDTTNSGDIITTSSDHDDCSTILPEIAARALGKEVLIEIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALSVTVIAQMGDAYGMTMNDLVNSLRQLLLKSQMSSDSDPY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2178 358 MobiDBLite consensus disorder prediction 109 164 - -
Lja3g2178 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Lja3g2178 358 MobiDBLite consensus disorder prediction 72 89 - -
Lja3g2178 358 MobiDBLite consensus disorder prediction 116 164 - -
Lja3g2178 358 Pfam Helix-loop-helix DNA-binding domain 170 215 IPR011598 GO:0046983
Lja3g2178 358 Gene3D - 162 234 IPR036638 GO:0046983
Lja3g2178 358 MobiDBLite consensus disorder prediction 72 95 - -
Lja3g2178 358 PANTHER BHLH TRANSCRIPTION FACTOR 1 351 - -
Lja3g2178 358 SMART finulus 171 220 IPR011598 GO:0046983
Lja3g2178 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 226 IPR036638 GO:0046983
Lja3g2178 358 Coils Coil 204 231 - -
Lja3g2178 358 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2178 Lja-Chr3 25659423 25663351 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2178 154 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.455 2.30e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g2178 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2178 - - gmx:100778376 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5239 3 94617196 94619700 Lja3g2178 3 25659423 25663351 PCT