Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2176 ATGGTGGAGTCAGGGGAAAATTGGCCTTGTGATCATTCTGTATTGGAAGTTGGTGGCGGTGGTGATGATGACGACGTTAAGGATTTATGTTTTGAAGATGAATTTATTGGTGATGATAATGATGATGGTCATTCTTTTGCTGAGGAGACTGTAGATCCCTTGACAGACAGAAAGGAGAGACAGCGGGAACTCTCTGAGAAATTGCTTGCACTTTCAGCCACCATACCTAGCATGAAGAAGATGGACAATACTTCGATCCTGGACAAAGCTAGCAACTACGTGAAACAACTTCAAGAACGTGTGAGGGAGCTAGAACAAGAAGTTGATCAATCCCACATTCGTAGCAACAAAGGCACCACCTCTTGCGAAGTGAACTCTGAAAATTACCGTACTGGTGGAAGAACAAATGAAAATTTTCCCGAGGTGAGAGTGAGAGTGTTACAGAAGGAAGTAATGGTTATAATCCATTGTGAAAAACAAAAGGGAATCATGCTCAAAATACTCTCTCATCTTGAAAATCTTCATCTCTCAGTAGCCAACACCAGTGTCTTGCAATTTGGGAAATCCACTCTCGACATCACCATTATTGCTCAGATGGGGGATGAATACAACATGACAGTCGATGAACTAGTCAAAACCCTGAGAGTAGCTATCTTGACTCAGTAG 666 0.4219 MVESGENWPCDHSVLEVGGGGDDDDVKDLCFEDEFIGDDNDDGHSFAEETVDPLTDRKERQRELSEKLLALSATIPSMKKMDNTSILDKASNYVKQLQERVRELEQEVDQSHIRSNKGTTSCEVNSENYRTGGRTNENFPEVRVRVLQKEVMVIIHCEKQKGIMLKILSHLENLHLSVANTSVLQFGKSTLDITIIAQMGDEYNMTVDELVKTLRVAILTQ* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2176 221 MobiDBLite consensus disorder prediction 109 134 - -
Lja3g2176 221 Gene3D - 54 113 IPR036638 GO:0046983
Lja3g2176 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 115 IPR036638 GO:0046983
Lja3g2176 221 PANTHER PROTEIN, PUTATIVE-RELATED 52 221 - -
Lja3g2176 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Lja3g2176 221 SMART finulus 53 103 IPR011598 GO:0046983
Lja3g2176 221 Coils Coil 87 114 - -
Lja3g2176 221 MobiDBLite consensus disorder prediction 113 134 - -
Lja3g2176 221 PANTHER BHLH TRANSCRIPTION FACTOR 52 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2176 Lja-Chr3 25621518 25625587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2176 54 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.953 1.66e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2176 - - aip:107616596 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2176 3 25621518 25625587 Lja3g5238 3 94610220 94615334 PCT