Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2116 ATGGAGTGCTTAAAATCACCTTTCAAAGGAGTTGTCAATGACATTCAAGGAAGAGCAAGGTGTTATAAAGATGATTGGACAAGTGCTTTTCGTTCAGGATTTGGGCTATTGGCTCCAACAACTTATATTTTCTTTGCTTCTGCTCTTCCTGTAATTGCCTTTGGCGCGCAGCTGAATAGAGACACAGATGGAAGCTTGAGCACGGTCGAAACACTAACTTCAACGGCGCTTTGTGGAATCATACACTCAATTTTTGGTGGCCAACCACTCCTTATTTTAGGAGTTGCAGAACCCACTATCATCATGTACACTTACCTTTACAACTTTGCCAAAAATAGAGATGGTTTGGGACAAGAACTCTATTTGGCTTGGGCAGGATGGGTTTGTGTGTGGACTGCTCTGTTGCTGTTTCTCCTAGCTGCATTCAATGCTGCCACTATCGTCAACAGATTTACGAGGGTTGCTGAAGAGCTTTTTGGCATGTTGATTACAGTTTTGTTCCTTCAAGAGGCTATCAAGGGTATGGTGGAGGAGTTTAAAGTTCCTAAAAATGAAAACTCAGCATCAAACCAGTACCTATTTCACTGGCTCTATGTGAATGGGTTACTAGGTGTTATATTCACATTTGGCCTTCTCTATACTGCATTGAAGAGCAGAAGAGCCAGGTCCTGGTTATATGGGACAGGGTGGTTGAGAAGTTTTCTTGCAGACTATGGGGTGCCTCTCTTGGTGGTAGTGTGGACAGCTTTCTCATACACAGTGCCAAGTAAACTTCCATCAGAAATCCCAAGAAGAATTGTTGCTCCTTTGGCTTGGGAATCTACATCTACGCGCCATTGGACAGTAATCCAAGATATGGGGAAGGTTTCTCCAACATATATTTTTGGTGCTTTTGTTCCTGCCTTGATGGTAGCAATGCTTTACTTCTTTGACCATAGTGTTGCATCCGGGATGACGCAACAGAAGGAATTCAATCTCAAGAAACCTACTGCATATCATTATGACATATTGTTACTTGGATTAATGGTTTTGATTTCTGGATTAATTGGCTTACCCCCTTCAAATGGTGTTCTGCCTCAATCTCCTATGCACACCAAGAGCCTTGCTGTTCTCAAGGGTCTGATGATTCGGAGAAAGATGGTTGCAACAGCCAGGGAAGGCATAAAAAAGAAAGCTAGCAACTTTGAAATATACGGGAAGATGCAAGAGGTGTTTGTAGAAATGGACAGTAGCCCAGTTACTTATGTGGAAAAAGAACTAGAGAACTTGAAAGAGGTTGTCCTCAAAGGTGAAGATAAAGGAGACAATAAAAAGGATACCTTTGACCCTGAGAAGCACATTGATGCATATCTTCCTGTTAGAGTAAATGAGCAGAGAGTGAGTAATTTCCTGCAATCACTCTTTGTTGGGGTATCGGTTTTCGCTATGCCTATCATAAAAAAGATTCCAACTTCAGTTTTGTGGGGATACTTTGCATACATGGCCATTGATAGTCTTCCTGGAAACCAATTTTGGGAAAGGATACTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAATTGTTGGAGGGTGATCATGCTTCCTTTGTGGAATCGGTACCAATCAAATACATAGTCCTTTTCACACTCTTGCAGTGTGTGTATTTCTTGGTTTGTTTTGGTGTGACATGGATTCCGATCGCCGGAATCTTGTTCCCTTTGCCATTCTTTGTACTGATCTTGGTGAGGAGACATATCCTCCCTAAGTTGTTCAATCCTTACCATCTAAGTGAACTAGATAGAGCTGAATACGAAGAAATCGCGGGTGCTCCAAGACTTTCCTTCAGTCAGATGGAGTCACCTAGTTTTGGTTCAAGGGAAATGTGTGATGGTGAAATATTAGATGAGTTAACTACTAGCAGAGGGGAGTTGAAGGTTAGAAGTGTTAGCTTTAGAGAGGAAAGGCATGGTCAGGTGTATCCTGATGAAATAGTTTGTGAAAATGAATCCTCATGA 1995 0.4175 MECLKSPFKGVVNDIQGRARCYKDDWTSAFRSGFGLLAPTTYIFFASALPVIAFGAQLNRDTDGSLSTVETLTSTALCGIIHSIFGGQPLLILGVAEPTIIMYTYLYNFAKNRDGLGQELYLAWAGWVCVWTALLLFLLAAFNAATIVNRFTRVAEELFGMLITVLFLQEAIKGMVEEFKVPKNENSASNQYLFHWLYVNGLLGVIFTFGLLYTALKSRRARSWLYGTGWLRSFLADYGVPLLVVVWTAFSYTVPSKLPSEIPRRIVAPLAWESTSTRHWTVIQDMGKVSPTYIFGAFVPALMVAMLYFFDHSVASGMTQQKEFNLKKPTAYHYDILLLGLMVLISGLIGLPPSNGVLPQSPMHTKSLAVLKGLMIRRKMVATAREGIKKKASNFEIYGKMQEVFVEMDSSPVTYVEKELENLKEVVLKGEDKGDNKKDTFDPEKHIDAYLPVRVNEQRVSNFLQSLFVGVSVFAMPIIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRWYKLLEGDHASFVESVPIKYIVLFTLLQCVYFLVCFGVTWIPIAGILFPLPFFVLILVRRHILPKLFNPYHLSELDRAEYEEIAGAPRLSFSQMESPSFGSREMCDGEILDELTTSRGELKVRSVSFREERHGQVYPDEIVCENESS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2116 664 Gene3D Helical hairpin bin 18 60 - -
Lja3g2116 664 Pfam HCO3- transporter family 202 371 IPR011531 GO:0006820|GO:0016021
Lja3g2116 664 Pfam HCO3- transporter family 7 183 IPR011531 GO:0006820|GO:0016021
Lja3g2116 664 Pfam HCO3- transporter family 453 543 IPR011531 GO:0006820|GO:0016021
Lja3g2116 664 PANTHER BORON TRANSPORTER 4-RELATED 1 658 - -
Lja3g2116 664 PANTHER ANION EXCHANGE PROTEIN 1 658 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2116 Lja-Chr3 24753173 24757472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2116 1 658 Antiporters AT1G74810 67.515 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2116 K24194 - gmx:100811184 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2116 3 24753173 24757472 Lja3g5164 3 94001231 94007438 ECH
Lja3g2116 3 24753173 24757472 Lja3g2116 3 24753173 24757472 ECH