Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2101 ATGGTTGGAAGTTCGTTGGGTGGGTTGCAAGAGCACCTCAAGCTAGCCAGAGAGTACGCTCTCGAAGGACAGTATGACACCTCCATCATCTTCTTCGATGGTGCTGTTGCTCAGATCAACAAGCACCTGAATTCTCTTGATGACCCTTTACTTCGTTCGAAATGGATGAATGTTAAGAAAGCGCTATCTGAGGAAACAGAAGTAGTAAAGCAGTTAGATGCAGAGAGAAGTGCTTTTAAAAATAACCCCATTGGAAGACGCCCTCCCTCACCTCCGATATCTACTAAATCGTCATTCGTTTTTCAGCCATTAGATGAGTATCCTACGTCATCGAGTGGTCCGATGGATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATACCAGTAGAAGACCCACAAGGCCTGGCCAAATGAGTACTCGGAAGTCAGATGGGGCATGGGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGTGGTGCAAAGGCCGGTGCAACAAGTAAGGTTAACACAGGGACCCGAGCATCAACTACCGGAAAGAAAAGTGGTGTTTCTGGGAAGGCTGGCAAGACAGATTCAGTTATTAGTGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAATATGAAGGTCCTGATCCTGAGTTGGCTGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCCTATGGATGCCGGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGGCATCTGGAGAGCACGAATCATCCAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAATTTGAAGACTGTTGAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCTTAA 1557 0.456 MVGSSLGGLQEHLKLAREYALEGQYDTSIIFFDGAVAQINKHLNSLDDPLLRSKWMNVKKALSEETEVVKQLDAERSAFKNNPIGRRPPSPPISTKSSFVFQPLDEYPTSSSGPMDDPDVWRPPSRDTSRRPTRPGQMSTRKSDGAWARGATPRGGATGRGAKAGATSKVNTGTRASTTGKKSGVSGKAGKTDSVISDAEESKSKKSQYEGPDPELAEMLERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFHEFGSA* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2101 518 Pfam AAA+ lid domain 429 470 IPR041569 -
Lja3g2101 518 ProSitePatterns AAA-protein family signature. 379 398 IPR003960 GO:0005524|GO:0016887
Lja3g2101 518 Pfam Vps4 C terminal oligomerisation domain 471 516 IPR015415 -
Lja3g2101 518 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 5 518 - -
Lja3g2101 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 515 IPR027417 -
Lja3g2101 518 PANTHER AAA DOMAIN-CONTAINING 5 518 - -
Lja3g2101 518 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 518 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lja3g2101 518 Gene3D - 3 80 - -
Lja3g2101 518 MobiDBLite consensus disorder prediction 165 185 - -
Lja3g2101 518 Pfam ATPase family associated with various cellular activities (AAA) 270 407 IPR003959 GO:0005524|GO:0016887
Lja3g2101 518 SMART AAA_5 266 409 IPR003593 -
Lja3g2101 518 CDD AAA 264 407 - -
Lja3g2101 518 MobiDBLite consensus disorder prediction 79 98 - -
Lja3g2101 518 Gene3D - 228 509 IPR027417 -
Lja3g2101 518 MobiDBLite consensus disorder prediction 103 216 - -
Lja3g2101 518 MobiDBLite consensus disorder prediction 194 216 - -
Lja3g2101 518 Gene3D - 408 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2101 Lja-Chr3 24505300 24509207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2101 222 510 Calmodulin-binding Proteins AT3G56690 40.268 1.33e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2101 K07767 - tcc:18595849 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2101 3 24505300 24509207 Lja3g2101 3 24505300 24509207 ECH