Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2097 ATGGCGAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTTTGCCTGGTGGGGAACGTATGAGTGACAAGAATGAGAAGAAGAGGGTGTTCTCAGAGATTGAAGGTGGCGGCGGGGATGAGAATAGCCGCTCCGGTGAGCGGAGAGTGGAGAAGAAGAGTGAAGTGGTGGTGGGGTGGCCTCCGGTGTGCTCATACCGGAAGAAGAACAGCGTGAATGAAGCTTCAAAAATGTATGTGAAGGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGACCTCAGCATGCATAAGGGGTATTCTGATTTGGCTTTTGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCGTTGAAGGATGCGGACAAGTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTACCGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAAGGCTTCAGTCTTCAACAGAAGGGATCTTTAAAGGGATTCATAGAAGGCGCGGCAAAGTGA 567 0.4815 MAKEGLGLEITELRLGLPGGERMSDKNEKKRVFSEIEGGGGDENSRSGERRVEKKSEVVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKIDLSMHKGYSDLAFALEKLFGCYGMVEALKDADKCEHVPIYEDKDGDWMLVGDVPWEMFTESCKRLRIMKRSDAKGFSLQQKGSLKGFIEGAAK* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2097 188 MobiDBLite consensus disorder prediction 19 53 - -
Lja3g2097 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Lja3g2097 188 SUPERFAMILY CAD & PB1 domains 72 164 - -
Lja3g2097 188 Gene3D - 73 177 - -
Lja3g2097 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 171 - -
Lja3g2097 188 Pfam AUX/IAA family 46 171 IPR033389 -
Lja3g2097 188 MobiDBLite consensus disorder prediction 18 53 - -
Lja3g2097 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 171 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2097 Lja-Chr3 24470898 24474331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2097 42 169 B3 DNA Binding Superfamily AT4G23980 34.375 1.19e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja3g2097 AUX_IAA 4.2e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2097 K14484 - gmx:547784 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2097 3 24470898 24474331 Lja3g2097 3 24470898 24474331 ECH