Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2087 ATGAGCGTGGTGGGTTTCGATTTCGGTAACGAGAGCTGCATTGTTGCAGTTGCCAGGCAGAGAGGGATTGATGTTGTGCTCAATGACGAGTCCAAGCGCGAAACTCCTGCTATCGTCTGCTTTGGCGACAAGCAACGATTCATCGGCACTGCTGGTGCTGCAACCACCATGATGAACCCCAAGAATTCCATCTCACAGATGAAGAGACTGATTGGAATACAGTTTTCAGATCCTCAGCTGCAGAGGGATCTCAAATCACTGCCTTTTTTAGTCACCGAAGGACCGGACGGGTACCCTTTGATTCACGCGCGGTATTTGGGTGAAACTAGGACGTTTACGCCTACCCAGGTGTTTGCGATGATGTTGTCGAATCTTAAGGAAATTGCCCAGAAGAATCTGAATGGGGCTGCGGTTGTTGATTGCTGCATTGGAATCCCGATTTATTTTACGGATCTTCAGAGGAGGGCTGTGTTGGATGCGGCCACGATTGCTGGTTTGCACCCGCTTCACTTGATTCATGAGACGACTGCGACTGCTTTGGCCTATGGGCTTTACAAAACGGATCTTTCTGAGACTGACCAGCTGAACGTCGCCTTTGTCGATATTGGACATGCTAGCATGCAAGTGTGCATTGCCGGATTCAAGAAGGGGCAGCTGAAAGTGTTGGCTCATTCGTACGATAGGTCCCTTGGTGGTAGAGATTTTGACGAGGCTTTGTTCGATCACTTTGTTGCGAAATTCAAGGACGAGTACAAGATTGATGTGTTGCAGAATGCTAGAGCCTGTTTAAGGCTCAGGGCTGCTTGTGAGAAGCTGAAGAAGATGCTTAGTGCAAATTCTGAGGCGCCTCTGAACATTGAGTGCTTGATGGAGGAGAAGGATGTCAGGGGCTTCATCAAGCGTGATGAGTTTGAGCAATTGAGTCTTCCAATCTTGGAGCGTGTGAAGGGACCTTTGGAGAAGGCTCTTGCTGAAGCAGATCTTGCGGTTGACGATGTTCACATGGTTGAGGTCGTCGGTTCAGGTTCTCGTGTGCCAGCTATAAACAAAATATTGACAGAGTTTTTCAAAAAGGAGCCTAGGCGGACAATGAATGCCAGTGAGTGTGTTGCTAGGGGTTGTGCATTGCAATGCGCAATTCTTAGTCCAACATTTAAAGTACGAGAATTTCAGGTCAACGAAAGCCTGCCGTTCTCGATTTCTCTTTCATGGAAAGGTTCTAGTCCAGATGCACAGGACAGTGGACCAAATAATCAACAAAGTTCTGTTGTTTTTCCCAAGGGTAATCCCATACCAAGTGTCAAGGCTCTGACATTCTACAGGTCCGGAACATTTTCCGTTGATGTACAATGTGGTGATGTGAGTGGCCTGCAATCACCAGCTAGGATCAGCACATACACCATTGGTCCTTTCAGAACTGCACAAAGTGAGAAGGCAAAGGTTAAAGTGAAAGTTCGTTTGAATCTGCAGGGAATAGTATCTGTTGAGTCAGCTACTCTGCTGGAAGAGGAAGAAGTTGATGTTCAAGTTTCCTCAGAATCAGCAAGGGAAAATACTAAGATGGACACTGATGAAGCTCCTGCTGATGCAGCTACACCTCCGACCTCCAATGACACTGATGTGAATATGCAAGATGCAAAGGCTAGTCCTGAGACCCCTGGGGTTGAAAACGGCATCCCTGAGGCTGGGGATAAGTCTGTGCAAATTGATTCTGATAGTTCCAAGTTTCAGGCTCCAAAGAAAAAGGTTAAGAGAACAAACATTCCTTTAGCAGAATTAGTTTATGGAACAATGGTACCTATTGATATCCAGAAAGCCTTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAACAAAAGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGATATGAGAAACAAGCTTAATGACAAGTACCAAGAGTTTGTCACTGCTTCAGAGCGGGAGGATTTTACTGCTAAACTTCAGGTTGTGGAAGATTGGCTATATGAGGAGGGTGAAGATGAAACTAAAGGTGTATATGTTGCCAAACTTGAAGAACTAAAAAAGCAAGGTGATCCAATCGAAGTGCGTTACAAAGAATACACGGAGAGGGGTGTAATAATTGATCAGTTCGTCTATTGTATAAATAGTTACAGAGAAGCTGCAATGTCAAAGGATCCTAAATTTGATCACATTGAGATCAATGAGAAACAGAAGGTCTTAAATGAGTGTGTTGAAGCTGAGAACTGGCTTAGGGAGAAGAAGCAGCAGCAGGACTCACTTCCAAAATATGCCAATCCTGTACTCTTGTCCGCTGAAATAAGAAAGAAAGCTGAGGCTGTTGATAGGTTCTGCAAGCCGATTATGACAAAACCAAGGCCAGCCAAGCCAGCTACGCCGCAAACACCACCAACCCCACCTTCTCAGGGTGGTGAGCAGCAGCAACCTCAGGGGGATGCTAATGCCAACACTCATGAGAATGGAGGGGATAACGGTAATCAGGTCCCACCAGCTTCTTCTGAACCAATGGAGACTGATAAGCCAGAGAACTCAGGCTCTACCTAA 2565 0.4573 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAATTMMNPKNSISQMKRLIGIQFSDPQLQRDLKSLPFLVTEGPDGYPLIHARYLGETRTFTPTQVFAMMLSNLKEIAQKNLNGAAVVDCCIGIPIYFTDLQRRAVLDAATIAGLHPLHLIHETTATALAYGLYKTDLSETDQLNVAFVDIGHASMQVCIAGFKKGQLKVLAHSYDRSLGGRDFDEALFDHFVAKFKDEYKIDVLQNARACLRLRAACEKLKKMLSANSEAPLNIECLMEEKDVRGFIKRDEFEQLSLPILERVKGPLEKALAEADLAVDDVHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESLPFSISLSWKGSSPDAQDSGPNNQQSSVVFPKGNPIPSVKALTFYRSGTFSVDVQCGDVSGLQSPARISTYTIGPFRTAQSEKAKVKVKVRLNLQGIVSVESATLLEEEEVDVQVSSESARENTKMDTDEAPADAATPPTSNDTDVNMQDAKASPETPGVENGIPEAGDKSVQIDSDSSKFQAPKKKVKRTNIPLAELVYGTMVPIDIQKALEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVTASEREDFTAKLQVVEDWLYEEGEDETKGVYVAKLEELKKQGDPIEVRYKEYTERGVIIDQFVYCINSYREAAMSKDPKFDHIEINEKQKVLNECVEAENWLREKKQQQDSLPKYANPVLLSAEIRKKAEAVDRFCKPIMTKPRPAKPATPQTPPTPPSQGGEQQQPQGDANANTHENGGDNGNQVPPASSEPMETDKPENSGST* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2087 854 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 601 697 IPR029048 -
Lja3g2087 854 MobiDBLite consensus disorder prediction 530 546 - -
Lja3g2087 854 PANTHER HSC70CB, ISOFORM G-RELATED 1 852 - -
Lja3g2087 854 Pfam Hsp70 protein 3 698 IPR013126 GO:0005524|GO:0140662
Lja3g2087 854 SUPERFAMILY Actin-like ATPase domain 1 186 IPR043129 -
Lja3g2087 854 MobiDBLite consensus disorder prediction 788 854 - -
Lja3g2087 854 MobiDBLite consensus disorder prediction 793 810 - -
Lja3g2087 854 Gene3D Actin; Chain A, domain 4 231 314 - -
Lja3g2087 854 Gene3D - 38 113 - -
Lja3g2087 854 MobiDBLite consensus disorder prediction 811 854 - -
Lja3g2087 854 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 852 - -
Lja3g2087 854 SUPERFAMILY Actin-like ATPase domain 196 381 IPR043129 -
Lja3g2087 854 CDD HSPA4_like_NDB 2 382 - -
Lja3g2087 854 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 388 593 IPR029047 -
Lja3g2087 854 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 631 IPR029047 -
Lja3g2087 854 MobiDBLite consensus disorder prediction 503 580 - -
Lja3g2087 854 Gene3D - 5 375 - -
Lja3g2087 854 Gene3D - 601 707 IPR029048 -
Lja3g2087 854 PRINTS 70kDa heat shock protein signature 2 15 - -
Lja3g2087 854 PRINTS 70kDa heat shock protein signature 333 349 - -
Lja3g2087 854 PRINTS 70kDa heat shock protein signature 30 42 - -
Lja3g2087 854 PRINTS 70kDa heat shock protein signature 141 161 - -
Lja3g2087 854 PRINTS 70kDa heat shock protein signature 364 384 - -
Lja3g2087 854 Gene3D - 187 361 - -
Lja3g2087 854 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 716 797 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2087 Lja-Chr3 24310800 24317374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2087 4 439 Calmodulin-binding Proteins AT1G16030 35.763 8.82e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2087 K09489 - gmx:100780156 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2087 3 24310800 24317374 Lja3g2087 3 24310800 24317374 ECH
Lja3g5134 3 93685009 93690721 Lja3g2087 3 24310800 24317374 PCT