Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2086 ATGCCCAAGAACATTCAGAAATCCCTTCATGACTACCTCTCCAAAATCAAAACCTCTCCTCGGTCCCAAATCCATTTGCATTTGCCCTCAAAGAAATGGATACTCAGAGGCTGCAAGCATCCCAGAACCCCTTCTTTCTCCATGGATGACAAGAAAATAGACAGACCAAATTCTGGTAACAACAACAACAACAACAAGAACGATGATGAAGCTACGCTAGCCGACATCGACCGTTTTCTCTTTGAGAATTTCAGGACTCTGTACCTCGGAGACGACGAAAAAACCCACAACACCAAAAGGGTCTCCGAGGAAGAGAATCATGGGAAACCCCAAAACCCAGGTCCCACATCGCTCGAATTGTTACCACCGGATCTCTCCGCTTTTTCTAGAAGGTTCTTCGTGACACGTGGCGCCTTCTCGGGATCGCTGCTGGAAACAGGGTCGAGCAGCTCTGCCTCCACCACCGCACGCAACACCGACGACGATTCGTCTCCAAAGGCGGCGGCGGCGGCGATTCCCGAGAACTGCGTGGCGGTGCTGGCACCATGCGCGAAGTGCCCCTATGAGGAGTTCAAGAGATCGATGGAAGGCGTGGTGGAAGAGAGGTTCAGGAACGATGAGAGCGTGGATTGGGATTTCATGGAGGAGCTCTTGTCCTGTTACATGAACATGAATGAGAAGAAACAGCACAAGTTCGTCCTCGCTGCTTTTGTAGACGTGATCGCCGTCATGCGCCGCCAGCCTCTGGCGATTGCTCCGGCGAAGCCAAGGAGTGTGAGGACCATGAGGATTGGTAGGGAGATCAGGAAGAAGACTAAGGAGGTGACATTGGAATTTGAGTCGTCGTGA 849 0.5183 MPKNIQKSLHDYLSKIKTSPRSQIHLHLPSKKWILRGCKHPRTPSFSMDDKKIDRPNSGNNNNNNKNDDEATLADIDRFLFENFRTLYLGDDEKTHNTKRVSEEENHGKPQNPGPTSLELLPPDLSAFSRRFFVTRGAFSGSLLETGSSSSASTTARNTDDDSSPKAAAAAIPENCVAVLAPCAKCPYEEFKRSMEGVVEERFRNDESVDWDFMEELLSCYMNMNEKKQHKFVLAAFVDVIAVMRRQPLAIAPAKPRSVRTMRIGREIRKKTKEVTLEFESS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2086 282 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 187 242 IPR006458 -
Lja3g2086 282 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 265 IPR038933 GO:0045892
Lja3g2086 282 MobiDBLite consensus disorder prediction 144 166 - -
Lja3g2086 282 MobiDBLite consensus disorder prediction 44 70 - -
Lja3g2086 282 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 3 265 - -
Lja3g2086 282 MobiDBLite consensus disorder prediction 96 121 - -
Lja3g2086 282 Pfam Transcriptional repressor, ovate 187 242 IPR006458 -
Lja3g2086 282 ProSiteProfiles OVATE domain profile. 180 243 IPR006458 -
Lja3g2086 282 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2086 Lja-Chr3 24233145 24234407 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja3g2086 Ovate 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2086 - - lja:Lj0g3v0139619.1 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2086 3 24233145 24234407 Lja3g2086 3 24233145 24234407 ECH
Lja3g5132 3 93664032 93664999 Lja3g2086 3 24233145 24234407 PCT