Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2071 ATGGACGACATGGACGAAACCCAAGACTTGCAGCGGTTACTATCGGAGCACCGCCGTGAACTCACCGCCGCGGAAGCCATGGAAACCGATCTCGACTTTGCATACCGTATCCAGTTACAAGAAGCCCTCGCCGCCTCCGTCGCCGCCCTCCCCTCTTCCTCCTCCTCCACCGCCATCATCCCGGAAGAGCCCGCCTTCGACGACGCCGTTCTGAACGCCACGTCATTACAGTTAGAGGAGCTAGCGAGGATGGAGCAGGAGATGAAGGACCTGGAGCAGAGCAAGGCGGAGATGCAGCACGCGAGGGAAGACCTCGTCCGTCGGATTCACGACCAGAAGATGGCCTCGGAGATTCTCGCGATCCCTGAGAGAGATTGGGAGGAGTGGGGTGACAATTACGAGAAGGCGTTCGGCGAGGGTTGCTCCTCCGGGGACCCTGGTGCGGTGTTTAGGGTTTATTTCAAGGGTTTGGTGAGTGAGGATTTTGTGAATGGTGAGAGTGAGAGAGTGGTTTTGGGTGGGATTGGTATTGCGATTTGTGATGAGGCTGATAATGTGTTGCTGGAAGTTTCTAAGCCCCTTCTTGGTACTGAAACCAGTAAGAAAATTTCAGAGGCTAAGGCTCTGATTGAAGCTTTCAATGCTGCCATTTTCATGGACCTGAAGCGTGTTGTTTACTATTGTGATTACCCCCCTCTCTTGCAACATTTAAGTGGAAAGTGGCCTGTGAATCAGCAGAAGCTTGCTAGACTAGTTAATGAAGTGTATCTTCTTCAAAGAAAATTTACATACTGCAATCCAAGGCTTGTGGCGAGACATGATCTCAAGTATGCATTTAAGCTGGCAAGAGATGCAATTGTTTCTCAGTCCACAAGGTCTGCAGAAGCTGGCAGTAGTACAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATACTGATATCAATCAATTTTTTTCTGTTGATGGATGTCAACACCGGTATTGCTTTTCTTGTGTGAAACAACATGTGGAGGTGAAGCTGCTCCAGGGAATGGTGCCAAAATGCCCTCATGAGGGGTGCAAAAATGAGCTTCTAGCTGAAAGCTGCCGGAAATTCTTGCCTCATAAACTGATTGAGACCATGCAGCAACGAAAAGTAGAAGCTTCAATTCCCGTTACTGAGAAAATCTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAGTACTCCAAAAATGTTATTGGTGCTCAAAAGCAATGTATAAAATGTCGTGGTTTTTTCTGTTTCATCTGCAAGGTCCCTTGGCATAATGGTATGACATGTCATGCTTATAAAAAGTTGAATCCTAACCCTCCTGCTGAAGACCTGAAGCTGAAGTCTCTGGCAACAAGGAGTCTTTGGCGGCAGTGTGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTATGAATTTTGCTATCAGTGCGGAGCTGGGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGCCGAGGAATATTTGGTTAGAGGGACATGA 1575 0.4724 MDDMDETQDLQRLLSEHRRELTAAEAMETDLDFAYRIQLQEALAASVAALPSSSSSTAIIPEEPAFDDAVLNATSLQLEELARMEQEMKDLEQSKAEMQHAREDLVRRIHDQKMASEILAIPERDWEEWGDNYEKAFGEGCSSGDPGAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSKKISEAKALIEAFNAAIFMDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLQGMVPKCPHEGCKNELLAESCRKFLPHKLIETMQQRKVEASIPVTEKIYCPYPRCSALMSKTEVLEYSKNVIGAQKQCIKCRGFFCFICKVPWHNGMTCHAYKKLNPNPPAEDLKLKSLATRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYQCGAGWKDKKATCSCPLWAEEYLVRGT* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2071 524 Pfam IBR domain, a half RING-finger domain 457 510 IPR002867 -
Lja3g2071 524 Pfam IBR domain, a half RING-finger domain 378 442 IPR002867 -
Lja3g2071 524 Pfam Reverse transcriptase-like 171 285 IPR002156 GO:0003676|GO:0004523
Lja3g2071 524 SUPERFAMILY RING/U-box 389 447 - -
Lja3g2071 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 387 IPR013083 -
Lja3g2071 524 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
Lja3g2071 524 Gene3D - 152 294 IPR036397 GO:0003676
Lja3g2071 524 SUPERFAMILY RING/U-box 456 519 - -
Lja3g2071 524 SUPERFAMILY RING/U-box 305 387 - -
Lja3g2071 524 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 33 520 - -
Lja3g2071 524 Coils Coil 74 108 - -
Lja3g2071 524 Coils Coil 7 27 - -
Lja3g2071 524 Pfam Zinc finger, C3HC4 type (RING finger) 307 351 IPR018957 GO:0046872
Lja3g2071 524 ProSiteProfiles TRIAD supradomain profile. 303 516 IPR044066 -
Lja3g2071 524 ProSiteProfiles Zinc finger RING-type profile. 307 351 IPR001841 -
Lja3g2071 524 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 520 IPR031127 GO:0004842|GO:0016567
Lja3g2071 524 SMART ibrneu5 455 512 IPR002867 -
Lja3g2071 524 SMART ibrneu5 374 442 IPR002867 -
Lja3g2071 524 Gene3D - 439 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2071 Lja-Chr3 24088405 24092136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2071 149 501 C3H Transcription Factor Family AT2G19610 35.180 7.08e-68 223