Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2070 ATGGAAGGTGAATCCTCTTCACGTTCCCCTGATACCGCTGAAGGGAAATCAACCACAACTCATTCGAATTCGCATTCGCATTCGCACATTGATCTTCTCAAGGACAATTTCGTCACAATCGAGTACGAAAACGGTAACAGGCTCTTACCCAAAATCATCATCAGCGACGAGTTCTACGAGAAGCTATGCGCACCCTGGAGAAAAACCCTGATTTTCAAATTACTAGGGAAGAAGAAGAAGGGGAAGGAGAAGGAGATTGGTTATTTCTTGATGAAGGATAAACTCAAAGAAACTTGGAAAATCCGGGCTGGTTTTGAGATGATTGATGTTGGGTATGGATTCTACGCGATCACATTCGATGAAGATGATGATCGAGATAAGGTTATTGGAAATGGGCCATGGGTTATTTTCAATCAGCTTTTGACTGTAAGGTTATGGAGTCCTGAGTTTGTGTCGTCGGAGAATGCGGTTGATAGAACCCTAATTTGGATTCGTTTTCCGGGTTTAAGTTTCGTTTTCCATGATGAGAGTGTTCTTTTTACTCTGGCTTCTTGTGCTGGTTGTCCTGTTAAAGTAGACCCTAACACTCTTAGGATAACTAATGGTCGATTTTCGGGTAGGGTTTGTGTTGCTAGGGTTTGTGTAGAGATAGACCTTAGTCTCCCATTGGTAGAGAATTTCTGTTTGCAGGATCATTGGTACAAAATTGAATATGAAGGCATGGACCTATTATTGCCCTCGGTCGTAGTGCGGCCGGAAGAGCCCCGCATTGAATTGAAGAGTTTCGAGAAGGTGGCGTCGGGCGAGGGTTGCTCCACCTCCGGCTCCGGCTCTAGGGATGATGGTTCGGTTTTTAGGGTTTATTTTAAGGGTTTGGTGAGTGAGGAGATTGTGAAGGGCCAGAAGGTGGTGTTTGGTGGGATTGGTGTTGCGGTTTGCGATGAGGATGATAATTTGTTGCTGGAGGTATCCAAGCCCCTCCTCCTTGGAATTGAAACCAGTAGGGTCATTGCAGAGGCTAAGGCTCTGATAGAAGCCTTAGATGCTGCCCACTCTTTGGAGCTGAAGCGTATCGTCTACTTTTGTGATTACTGCACTCTCTTACAATTTGTAAGTGGAAAATGGCCTGTGAAACACCAGAAGGTTGCTATGCTAGTTAATGAAGTGCATCTACTTCAAAGAGAATTTACATACTGCAATCCAAGGCTTGTGTCCAGAGATGATCTCAAGTATGCATCTAAGCTGGCAAGAGATGCAATTGTTTCTCAGTCCACAAGGCATGCAGAATCTGGCAGTAGTACAAAGAGTCTGAATCAAACTTGTGTCATTTGTTTGGAGGATTCTGATATCAATCAATTTTTTTCTGTTGATGGATGTCAGCACCGGTATTGCTTTTCTTGCATGAAACGACATGTGGAAGTGAAGCTACTCCATGGAATGGTACCAAAATGCCCTCATGAGGGGTGTAATAATGAACTTCTAGCTGACAGTTGCCGGAAATTCTTGCCTCATAAACTAATTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCCGTTACCGATAAAATTTATTGTCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAGTACTCCAAAAATCTTACTGGTTCTGAACCAGGACGCAAGAGATGTATAAAATGTCGCCGTTTTTTCTGTTTCATGTGCAAGGTCCCTTGGCATTTTGATATGTCATGTTATAGGTACAAAATGTTGAATCCTAACCCTCCAGCTGAAGACCTGAAGCTGAAGTCTCTGGCAACAAGTAGTTTTTGGCGGCAGTGTGTGAAATGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATAACTTGCAGATGCGGTAATGAATTTTGCTATCAGTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTGATTGTCCACTTTGGGCCGATGACGATGAGAGTGAGTGGGAAGAAGATGAAGATGTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATTCATACACTGATAGTCCTGATGATTTTTATTAA 2073 0.4274 MEGESSSRSPDTAEGKSTTTHSNSHSHSHIDLLKDNFVTIEYENGNRLLPKIIISDEFYEKLCAPWRKTLIFKLLGKKKKGKEKEIGYFLMKDKLKETWKIRAGFEMIDVGYGFYAITFDEDDDRDKVIGNGPWVIFNQLLTVRLWSPEFVSSENAVDRTLIWIRFPGLSFVFHDESVLFTLASCAGCPVKVDPNTLRITNGRFSGRVCVARVCVEIDLSLPLVENFCLQDHWYKIEYEGMDLLLPSVVVRPEEPRIELKSFEKVASGEGCSTSGSGSRDDGSVFRVYFKGLVSEEIVKGQKVVFGGIGVAVCDEDDNLLLEVSKPLLLGIETSRVIAEAKALIEALDAAHSLELKRIVYFCDYCTLLQFVSGKWPVKHQKVAMLVNEVHLLQREFTYCNPRLVSRDDLKYASKLARDAIVSQSTRHAESGSSTKSLNQTCVICLEDSDINQFFSVDGCQHRYCFSCMKRHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGRKRCIKCRRFFCFMCKVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATCDCPLWADDDESEWEEDEDVDDDDDDDDDDDDDDSYTDSPDDFY* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2070 690 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 267 659 - -
Lja3g2070 690 MobiDBLite consensus disorder prediction 656 690 - -
Lja3g2070 690 Pfam Domain of unknown function (DUF4283) 66 205 IPR025558 -
Lja3g2070 690 ProSitePatterns Zinc finger RING-type signature. 459 468 IPR017907 -
Lja3g2070 690 SUPERFAMILY RING/U-box 522 583 - -
Lja3g2070 690 Gene3D - 286 428 IPR036397 GO:0003676
Lja3g2070 690 ProSiteProfiles Zinc finger RING-type profile. 441 485 IPR001841 -
Lja3g2070 690 ProSiteProfiles TRIAD supradomain profile. 437 655 IPR044066 -
Lja3g2070 690 SUPERFAMILY Ribonuclease H-like 306 416 IPR012337 -
Lja3g2070 690 SUPERFAMILY RING/U-box 439 521 - -
Lja3g2070 690 SMART ibrneu5 592 649 IPR002867 -
Lja3g2070 690 SMART ibrneu5 508 579 IPR002867 -
Lja3g2070 690 Pfam IBR domain, a half RING-finger domain 510 579 IPR002867 -
Lja3g2070 690 Pfam IBR domain, a half RING-finger domain 593 647 IPR002867 -
Lja3g2070 690 MobiDBLite consensus disorder prediction 10 26 - -
Lja3g2070 690 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 267 659 IPR031127 GO:0004842|GO:0016567
Lja3g2070 690 SUPERFAMILY RING/U-box 593 654 - -
Lja3g2070 690 Gene3D - 577 678 - -
Lja3g2070 690 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g2070 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 522 IPR013083 -
Lja3g2070 690 Pfam Reverse transcriptase-like 306 419 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2070 Lja-Chr3 24082833 24086629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2070 279 638 C3H Transcription Factor Family AT2G19610 37.808 9.24e-70 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2070 - - ahf:112736554 571.622