Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2060 ATGGGTCTTACATCAGGTAAGGGTACTGGCAGTTTCGGTAAGCGTAGGAACAAGACCCACACCCTCTGTGTCAGGTGTGGCCGCCGCAGCTTCCACCTCCAGAAGAGTCGCTGCGCCGCCTGCGCCTTCCCCGCTGCACGCAAGAGGAAGTATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACCACTGGCACTGGAAGAATGAGGTACTTGCGTAACGTGCCTCGCAGGTTCAAGAGCGGTTTCAGAGAAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCATCTACCTAA 300 0.5567 MGLTSGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2060 99 PANTHER RIBOSOMAL PROTEIN L37 6 98 - -
Lja3g2060 99 Hamap 50S ribosomal protein L37e [rpl37e]. 6 57 IPR001569 GO:0003735|GO:0005840|GO:0006412
Lja3g2060 99 Gene3D - 5 91 IPR011331 GO:0003735|GO:0005840|GO:0006412
Lja3g2060 99 Pfam Ribosomal protein L37e 7 57 IPR001569 GO:0003735|GO:0005840|GO:0006412
Lja3g2060 99 ProSitePatterns Ribosomal protein L37e signature. 8 27 IPR018267 GO:0003735|GO:0005840|GO:0006412
Lja3g2060 99 PANTHER 60S RIBOSOMAL PROTEIN L37 6 98 - -
Lja3g2060 99 SUPERFAMILY Zn-binding ribosomal proteins 6 59 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2060 Lja-Chr3 23922157 23923723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2060 7 98 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 90.217 1.46e-58 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2060 K02922 - csv:101221537 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2060 3 23922157 23923723 Lja3g2060 3 23922157 23923723 ECH