Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2058 ATGTCGTCTCTGTCACCGCCGGAGGCCTCTCCGGTAGACACCTCCGCCGCATCTCCTCCTCTACCGGCGCACCCCAGCAGCATTCCGGTCAATTTCACGCCGACTGCCACCACTCCGACGCCGGGTTTCATCGCGACGGAGCATACTCCGGATCCGAATAACGACGGCATGGCGAGGGGTACGTTGAACGGGATAATCATAGGGGTTGTGCTTGGTTCAGTGGGTATGCTTATCGTTGGTGGTATTTTCTTCCTTTTGCATAGAAATCGGAATCGGAAGAGACTCCAGAATAGCAACATGGAAGCTCCTCCGCCACCGCCACCACCAAAAGCTGACCAGGTTGGTGGCTTATTTAAGCATTGGCAAGCCGGTGTTCCTCCAGCAGCAGATGGTAAAGCAGGCTTGCCGCCTAAGCCTCCCGGGGTTTTGAGGGGTCAAAAACAATCATCTCATTCTCCAACCCCCAGCAGTTTGGGGTCCGAGAGGCCACACCTCTCCCCGTCTCCTGGCCTTTCCTTGTCGCTATCGCAGAGCACTTTCTCGTATGATGAACTAGAAATGGCAACGGATGGATTCTCTGATTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCGAAATGGAAAAACTGTTGCAGTTAAACAACAGAAATCAGAGAGTAGACAAGGGGATCGCGAGTTTTGTGCTGAAGTAGAGGTCATTAGCCGTGTGCATCACAGACATCTTGTTACCCTAGTCGGATACTGCGTCTCAGATGTCCATACGATGCTTGTCTATGAGTTCGTGTCAAATAAAACACTAGAATTTCATTTGCATGGAAAGGACAGACCAACTATGGACTGGTCCACAAGGATGAAGATTGCTGTGGGATCTGCTAAAGGATTGGCATATTTACACGAGGACTGTAATCCTAAAATCATACACCGTGACATCAAGGGATCTAACATCCTTCTTGATGATAATTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCCAAATTTTCATCTGACACAGATACCCATGTTTCTACCCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTCACTGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACTGGACGAAAACCTGTTGATAAAACTCATCGTTTCATAGACGACAGCATGGTTGAATGGGCAAGGCCTTTACTGTCTCAAGCTTTGGAGAATGGAAACTTTAAAGAACTTGTTGATCCAAGGTTAGAGACAAACTACAATCCTGATGAGATGATTCACATGACTGCTTGTGCTGCAACTTGTGTGCGCCAATCAGCTAGGCTTCGGCCTCGAATGAGCCAGGTTGTTAGAGCTCTAGAAGGAAACATTTCTCTAGATGATCTAAATGAGGGGAGCACACCTGGGCACAGCAGAGTTTTTGGTTCCTTTGAGAGTTCAAATTATGATAGTACTCAATACAGTGAAGACCTAAAGAAGTTCAAGAAGTTGGCATTGGAAAGCCAAGAGTGCAGCGGGCCCAGCAGCGAGTATGGCCAACATCTATCTGCCTCCACCAGTTCAGGCCAGCAAAATACACAAGAGATTGAAATAGGGAATGGGAAGGAGGGTAGCAACCATGGTTAG 1662 0.4753 MSSLSPPEASPVDTSAASPPLPAHPSSIPVNFTPTATTPTPGFIATEHTPDPNNDGMARGTLNGIIIGVVLGSVGMLIVGGIFFLLHRNRNRKRLQNSNMEAPPPPPPPKADQVGGLFKHWQAGVPPAADGKAGLPPKPPGVLRGQKQSSHSPTPSSLGSERPHLSPSPGLSLSLSQSTFSYDELEMATDGFSDSNLLGQGGFGYVHKGVLRNGKTVAVKQQKSESRQGDREFCAEVEVISRVHHRHLVTLVGYCVSDVHTMLVYEFVSNKTLEFHLHGKDRPTMDWSTRMKIAVGSAKGLAYLHEDCNPKIIHRDIKGSNILLDDNFEAKVADFGLAKFSSDTDTHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTHRFIDDSMVEWARPLLSQALENGNFKELVDPRLETNYNPDEMIHMTACAATCVRQSARLRPRMSQVVRALEGNISLDDLNEGSTPGHSRVFGSFESSNYDSTQYSEDLKKFKKLALESQECSGPSSEYGQHLSASTSSGQQNTQEIEIGNGKEGSNHG* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2058 553 MobiDBLite consensus disorder prediction 96 115 - -
Lja3g2058 553 Gene3D Phosphorylase Kinase; domain 1 173 267 - -
Lja3g2058 553 SMART serkin_6 192 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2058 553 Pfam Protein tyrosine and serine/threonine kinase 196 465 IPR001245 GO:0004672|GO:0006468
Lja3g2058 553 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 19 533 - -
Lja3g2058 553 Gene3D Transferase(Phosphotransferase) domain 1 268 477 - -
Lja3g2058 553 MobiDBLite consensus disorder prediction 28 44 - -
Lja3g2058 553 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 19 533 - -
Lja3g2058 553 MobiDBLite consensus disorder prediction 145 172 - -
Lja3g2058 553 MobiDBLite consensus disorder prediction 122 172 - -
Lja3g2058 553 MobiDBLite consensus disorder prediction 514 553 - -
Lja3g2058 553 MobiDBLite consensus disorder prediction 1 51 - -
Lja3g2058 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Lja3g2058 553 SUPERFAMILY Protein kinase-like (PK-like) 166 465 IPR011009 -
Lja3g2058 553 ProSitePatterns Protein kinases ATP-binding region signature. 198 220 IPR017441 GO:0005524
Lja3g2058 553 ProSiteProfiles Protein kinase domain profile. 192 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2058 Lja-Chr3 23885356 23889991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2058 60 517 Trihelix Transcription Factor Family AT5G38560 52.790 1.68e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lja3g2058 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2058 - - ccaj:109808169 762.681