Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2044 ATGAGCAACCCATTTAAAGCTCTCAACAAACCCTTCTCTTCCCTCTCCTTTCATAAACTCTCTTCTCATGCTTTCATAGCCGCCCCTTTCCCTCTCCAATCTGCTAACTACTCCAGAGTCTGTTGCTGTGTATCTCAATTTCGCCCTCACTCCTCATCTCCAACTGCTACATTTATGGAGGTCTTCAAAGCAATTGCTAAGCAAGAACATGCAGCTCCTGACAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTATAGGAACCTCATCTCATCCGCGCGCAAGATATCTGATCTCTTGTGCGGAAAAGATGTAAAAGGAAATCTTGCGGGAGCTCGAATAGGGATTTTAGCCAAGCCGTCTGCTGAGTTTGTTGCAGCACTACTTGGAACTTGGTTAAGTGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAAGTAGAGTTCTTGCATGTGACTAATACTTCGAATGTGTCTGCAATCCTGAGTACTGAAGATCATAGCGAATTAATGCAAAGCATTGCCAGTAAAAGCTCTTGTCAGTTTTTTAACCTTCCATCTGTTCCCAGTACTTCTTCAGAGGAAAGCAGAGATGAACGTTCACAGGGTGGGGAAATTGATTCAAACGGAATTTCCCTGGAGAATATTGGAAGATCAAGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACAGGTAAACCTAAGGGAGTTGTGCATACACACAGAAGCATCATTTCCCAGGTCCAAACCTTGACAAAAGCGTGGGAGTACACATCTGATGATCAGTTTCTGCATTGTCTACCACTACATCATGTTCATGGGCTATTCAATGGTTTACTGGCACCTCTCTATGCAGGTTCCACGGTTGAGTTTCTGCCAAAATTTAGTGTGAGGGGAGTTTGGCAAAGGTGGCGTGAGTCATATCCAACTGGAGGATCAAAGGTTGATGGTGGTGCTATAACTGCATTTACTGGAGTTCCAACTATCTATAGCCGACTAATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCTGCTTCAGCATCTGCTGCAAGGAACTTGCGCCTTATGATGTGTGGGTCCTCCGCACTTCCTCAACCGGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAGCGATATGGTATGACTGAATTTGTCATGGCATTGTCAAATCCATTGAAAGGTAAGCGTAAGGCAGGCACCGTAGGCAAACCATTTCCTGGTGTACAGGTCAAAATTCTTGAAGATGATGGGAGTGATAGTGGACTCACTGGAACGGGTGAGCTTTGCATTAAAAGTCCTTCAATGTTTAAAGAATATTGGAATCTTCCTGAGGTAACAAAGGAATCATTTACAAATGATGGATTCTTTAAGACTGGAGACGCAGTTACCACAGATAAAGATGGGTATTACATCATTCTTGGACGTACTAATGCTGATATAATCAAGGCTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAATCAGTTATAATAGAGCATCCAGCTGTCTCAGAATGTAGTGTTTTGGGCTTACCAGACAAAGTCTATGGAGAAATTGTTGGTGCAGTTATTGTGCCAGAGCCTTCTGTTAAACGAAAGCGAGAGGAAGAGTCAAAGCCTGTTCTAACCCTAGAAGAGTTATCCTCCTGGGCCAAAGACAAAATTGCACCCTACAAGGTATGGTGGCATGGTTATTTTTTGTTTATACTTTCTCTGATGCATTATGTATGTATGTATCAAGTGAGAGTGAAGATTGTAGGGTCAACATTAGCTTCAGTCATTTGTCAGTCACCAAATACACTTCTTATGCGGGTGTGCGTTCATGTTGCACTAAATGTAACCTGTCATGACTTACCCTCAGAATCTTGTATCTCCTACTTCCCCCTCCTAAATCACACATTTCCTTCATTATCAGCCCACTATCATCCTAAGCTCCCCTTAACCTTTTGA 1980 0.4308 MSNPFKALNKPFSSLSFHKLSSHAFIAAPFPLQSANYSRVCCCVSQFRPHSSSPTATFMEVFKAIAKQEHAAPDSVAIRADQKSYSYRNLISSARKISDLLCGKDVKGNLAGARIGILAKPSAEFVAALLGTWLSGGVAVPLALSYPEVEFLHVTNTSNVSAILSTEDHSELMQSIASKSSCQFFNLPSVPSTSSEESRDERSQGGEIDSNGISLENIGRSSEDPALILYTSGTTGKPKGVVHTHRSIISQVQTLTKAWEYTSDDQFLHCLPLHHVHGLFNGLLAPLYAGSTVEFLPKFSVRGVWQRWRESYPTGGSKVDGGAITAFTGVPTIYSRLIQGYHAMDPELQAASASAARNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGKRKAGTVGKPFPGVQVKILEDDGSDSGLTGTGELCIKSPSMFKEYWNLPEVTKESFTNDGFFKTGDAVTTDKDGYYIILGRTNADIIKAGGYKLSALEIESVIIEHPAVSECSVLGLPDKVYGEIVGAVIVPEPSVKRKREEESKPVLTLEELSSWAKDKIAPYKVWWHGYFLFILSLMHYVCMYQVRVKIVGSTLASVICQSPNTLLMRVCVHVALNVTCHDLPSESCISYFPLLNHTFPSLSAHYHPKLPLTF* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2044 659 ProSitePatterns Putative AMP-binding domain signature. 228 239 IPR020845 -
Lja3g2044 659 MobiDBLite consensus disorder prediction 188 218 - -
Lja3g2044 659 PANTHER ACYL-COA SYNTHETASE 40 575 - -
Lja3g2044 659 SUPERFAMILY Acetyl-CoA synthetase-like 52 570 - -
Lja3g2044 659 Pfam AMP-binding enzyme 68 491 IPR000873 -
Lja3g2044 659 Pfam AMP-binding enzyme C-terminal domain 502 570 IPR025110 -
Lja3g2044 659 Gene3D - 61 485 IPR042099 -
Lja3g2044 659 Gene3D - 491 573 IPR045851 -
Lja3g2044 659 PANTHER MALONATE--COA LIGASE-LIKE 40 575 - -
Lja3g2044 659 CDD MCS 74 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2044 Lja-Chr3 23788257 23796404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2044 223 569 Monolignol Biosynthesis Gene Families AT4G19010 28.134 1.76e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2044 K18660 - gmx:100813324 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2044 3 23788257 23796404 Lja3g2044 3 23788257 23796404 ECH