Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2022 ATGGAGGCGCCGGAATACTTCGTCGGTGGCTATTACGGCGCCGGAGGACAGGACCAATTCTCGCCGGCGGAGAAACGCCACACCGACCAGAAACCCGGCGAGCCTTTTGCCATCGACGACCTCTTCGATTTCTCCAATGCCGATGCTATTATGTCCGATGGTTTCTTCGACAATGTCGCCGGAAACTCCACCGACTCCTCCACCGTCACCGCCGTTGACAGCTGCAACTCCTCAATTTCCGGCGGAGACAACAACCGCTTCGCCGCCGCCATTGTCCCCCGTGGCTTCGCCAGTGATCTCCACCTCTCCGGCGAGCTCTGTGTTCCGTATGATGAAATGGCTGAACTGGAATGGCTCTCGAATTTCGTGGAAGACTCGTTCTCCGCGGAGGAGGAGCTGAGAACGCTGAAGCTTCTCTCTGGCGCCGCCGCTACCACCACCGTAGGCACCAAGCCGCAGACTCCGGAATCCTCCTCCTCCACCGACACTCTCCCGCCGTTCGCCGCGGATGACAGCACCCGCAACGCGCCGTTCCTCATCTCGGAAACCCCGCTCCCGGGGAAGGCGCGGAGCAAGCGGTCGCGACCGGCGCCGGGGGACTGGTCCACGCGCCTCCTCCATTTGGTCTCTCCCTCCGACGCGCCTTCGCAGCAACAGAAGGTTGCGCCGGTGAAGAAGCGGGAGGGGCTGAACACGGAGTGCACCGGGAGGAAATGCCTCCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGATGGGGCCGAAGACCCTCTGCAATGCGTGTGGTGTGAGGTTCAAGTCCGGGAGGTTGGTGGCGGAGTATCGTCCGGCGGCGAGCCCGACGTTTGTGTCGGCGCGGCACTCGAATTCTCACCGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGACATGCAGCGGCAGCAGCAGCAGCAACTGATGAGTCAGAGTTCGATTTTCGGCGGATCCAACGGTGGAGATGAGTTCATGATCCGTCATCATCATCAGCATCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCATTGTGGGCCAGAGTTTAGGCATGTTATCTAG 1080 0.6148 MEAPEYFVGGYYGAGGQDQFSPAEKRHTDQKPGEPFAIDDLFDFSNADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGGDNNRFAAAIVPRGFASDLHLSGELCVPYDEMAELEWLSNFVEDSFSAEEELRTLKLLSGAAATTTVGTKPQTPESSSSTDTLPPFAADDSTRNAPFLISETPLPGKARSKRSRPAPGDWSTRLLHLVSPSDAPSQQQKVAPVKKREGLNTECTGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVAEYRPAASPTFVSARHSNSHRKVLELRRQKDMQRQQQQQLMSQSSIFGGSNGGDEFMIRHHHQHHHHQQQQQQQQHCGPEFRHVI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2022 359 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Lja3g2022 359 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Lja3g2022 359 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Lja3g2022 359 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Lja3g2022 359 PANTHER GATA TRANSCRIPTION FACTOR 9 1 358 - -
Lja3g2022 359 MobiDBLite consensus disorder prediction 335 359 - -
Lja3g2022 359 MobiDBLite consensus disorder prediction 145 202 - -
Lja3g2022 359 Coils Coil 297 317 - -
Lja3g2022 359 MobiDBLite consensus disorder prediction 145 168 - -
Lja3g2022 359 MobiDBLite consensus disorder prediction 8 31 - -
Lja3g2022 359 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 296 - -
Lja3g2022 359 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Lja3g2022 359 Gene3D - 234 319 IPR013088 GO:0006355|GO:0008270
Lja3g2022 359 PANTHER GATA TRANSCRIPTION FACTOR 1 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2022 Lja-Chr3 23570406 23572079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2022 34 359 C2C2-Gata Transcription Factor Family AT4G32890 42.433 2.18e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja3g2022 GATA 4.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2022 - - gmx:100776605 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2022 3 23570406 23572079 Lja3g2022 3 23570406 23572079 ECH