Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2021 ATGTCCTGCAAGGATGGAAGCAAGAACGCGATGGATAACGGCAAGTATGTTCGTTACACGCCGGAGCAGGTTGAAGCCCTCGAGAGGCTTTATCACGAGTGCCCTAAGCCCAGTTCCATTCGCCGCCAGCAGCTCATACGCGAGTGCGCTATTCTCTCCAACATTGAGCCTAGGCAGATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAAGAAGGTTTTCGTCTGCAAGCTGTTAATAGGAAGTTGACTGCCATGAACAAGCTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAAAATAGCTATTTTCGTCAAAACACCCCAAACACTACGCTGGCAACCAAAGACACAAGCTGTGAATCAGCGGTGACGAGTGGTCAGCACAGTTTGACAACTCAACATCCCCCGAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGCGGTCTAGTGGGACTAGAACCCACAAGGGTCGCTGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCAGAACTGTTGATGTTCTCAATGTGCTGCCCACCGCAAATGCTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGATTTTTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTACTAGCATGCCTCCAGTGCAACATTTTATTAGAGCGGATATTCTTCCCAGTGGGTACCTGATACGAGCTTGTGAAGGAGGGGGTTCCATCATCCACATTGTTGATCATATGGATTTGAAGCCATGGAGTGTGCCAGAAGTACTGCGTCCACTGTATGAATCGTCAACAGTGCTGGCTCAGAAGATCACTATGGCGGCCCTACGTCAGTTAAGGCAGATTTCACATGAGGTTTCTCAGCCTAATGTCACTGGGTGGGGTAGACGTCCGGCAGCTCTACGAGTACTTACCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACTGATGAGGGATGGTCAGTGATGAGCAATGACGGTGTAGATGATGTGACTATTCTAGTGAATTCGTCCCCTGATAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTCCCTTCTGTCAGTAATGCAGTGCTATGTGCTAAAGCGTCAATGCTACTACAGAATGTGCCCCCAGCTATTCTCCTAAGGTTTCTACGGGAGCATAGATCAGAGTGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCCATTAAAGTCGGCCCTTGTAGCTTACCAGGATCTCGCACGGGAAATTATGGGGGTCAAGTTACACTCCCTCTAGCGCACACTATTGAGCATGAGGAGTTATTGGAAGTCATTAAATTGGAAGGAGTTGCTTATTCTCCTGAAGACACAATAATGCCCAGAGAAGTATTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATTTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCACTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAAGCTGGAAAGGAAGCTTCCAGCCCTAATCGCACCCTTGACCTTGCATCTGCCCTTGACATTGGCCCCGCCAGAAACCGAGCTTCAAATGATAATGCTGGAAGTTCTGGCTGTACCAGATCTGTGATGACAATGGCATTTGAGTTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCTATGGCTCGTCAATATGTTCGCAGCATTATTTCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCTGGGCTTAGGACACCATTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAATAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAATGAGGGGAGTGAATCTTTACTGAAGTCCTTGTGGCATCATTCGGATGCTATATTATGCTGTACTCTAAAGGCATCACCAGTATTCACTTTCTCAAACCAGGCGGGGCTTGACATGCTCGAGACTACCCTGGTAGCATTACAAGATATAACTTTGGAGAAAATATTTGATGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGCGACCTGTCTCATACGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAAAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2511 0.4608 MSCKDGSKNAMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECAILSNIEPRQIKVWFQNRRCREKQRKEGFRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSYFRQNTPNTTLATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRTVDVLNVLPTANAGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGTSMPPVQHFIRADILPSGYLIRACEGGGSIIHIVDHMDLKPWSVPEVLRPLYESSTVLAQKITMAALRQLRQISHEVSQPNVTGWGRRPAALRVLTQRLSRGFNEALNGFTDEGWSVMSNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLPGSRTGNYGGQVTLPLAHTIEHEELLEVIKLEGVAYSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLEAGKEASSPNRTLDLASALDIGPARNRASNDNAGSSGCTRSVMTMAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGSESLLKSLWHHSDAILCCTLKASPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGLCLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWSFV* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2021 836 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 836 - -
Lja3g2021 836 CDD START_ArGLABRA2_like 153 368 - -
Lja3g2021 836 CDD homeodomain 15 75 IPR001356 GO:0003677
Lja3g2021 836 Pfam MEKHLA domain 693 835 IPR013978 -
Lja3g2021 836 SMART HOX_1 12 78 IPR001356 GO:0003677
Lja3g2021 836 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Lja3g2021 836 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Lja3g2021 836 ProSiteProfiles START domain profile. 149 377 IPR002913 GO:0008289
Lja3g2021 836 SMART START_1 158 368 IPR002913 GO:0008289
Lja3g2021 836 Gene3D - 6 78 - -
Lja3g2021 836 SUPERFAMILY Bet v1-like 158 367 - -
Lja3g2021 836 MobiDBLite consensus disorder prediction 119 148 - -
Lja3g2021 836 Coils Coil 80 111 - -
Lja3g2021 836 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Lja3g2021 836 Pfam START domain 159 367 IPR002913 GO:0008289
Lja3g2021 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 836 IPR044830 GO:0003700
Lja3g2021 836 MobiDBLite consensus disorder prediction 119 151 - -
Lja3g2021 836 Gene3D - 193 375 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2021 Lja-Chr3 23543458 23552334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2021 1 788 Homeobox Transcription Factor Family AT1G52150 83.291 0.0 1377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g2021 START 9.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2021 K09338 - gmx:100800165 1566.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2021 3 23543458 23552334 Lja3g2021 3 23543458 23552334 ECH
Lja3g5087 3 93219048 93226481 Lja3g2021 3 23543458 23552334 PCT