Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2015 ATGTTGAACTTTGAAATTCAACAAGTCGAGCACAACATGTCATCATCCTGGGAAGCACCACTGACTTCATCACAAGGTGAAAACATAAGGAACAGAGGTGGTGATCAACAATCAGCAGTTGCGACTCTTCAGAATGTGGTAGAAGCTCCTCCTGCTTCCAGTGAAGGCGCCCAAGTTCAAGATTCCAACCAAGGAACCATGAGAAAGGGCTATAAACGCCACTCTCATCTCCAGAAAAAAGAAATGGAAAGCTTCTTCAAGGAATGCCCTTACCCTAATGAGAAGCAAAGGAGTGAGCTTGGAAATTTGATCGGGCTGAATTCTTCCCAAATCAAGTTTTGGTTCCAAAACAAGCACGTCCAAATGAAGGCTATGAAGGAACGTCATAAGAGTACTCTTTTGATTGCTGAGAATGAAAAGCTTCGTGCTGAGAATTTGAAGTACAAGGAGGCACTGAGTAAGGCTAAGTGCCATGGTTGTGGAGGCTCATGTTCTGTTGGTGAAATGTACTTTACAGAGAAATATTTGAGGTTCGAGAATTCTCAATTGAAAAAAGAGATTGAGAATATGGCAACAAAAATTGCTGAAAAACTTGCAGAGACTTCCTTTTCTAACCTGCCACCACTACCTCTCACTCTAGGGCCTTCACGCTTGCTTGATGTTGTTAACTATGTTCCACAGCCAAGCATGGCAATGCAAGTGCATGGTGGCAGTGATTCTCAAAGGTCAATTATCGTAACTCATTTTACTGAATCTGAGAGAGCCTATATTGTGGAGCTTGCGATTTCCGCAATGGAGGAATTTACAAAGATGGCTCATGATGGAGGAACTTTATGGATCCCTGGAATCCATGCTGATATTCTAAATAAACAAGAATATGTTAGGCATTTCAATGTAAGACTAGGTCCAAGACCCTTGGGGTTTAGATCTGAAGCTTCAAGGGAATCCATGACTGTTATCATGAATCCTAATAACCTCATTGAAATCCTTATGGACGTGAACCAATGGTCAACTATGTTTTCCAACATTGTTTCAAGAGCAAGTATAATTGAAATTCTGTCAACTGGAGGGGCAAGAAACTATGATGGAGCCTTACAAGCGATGTCAGCAGAGTTCAAGGTGTTGTCACATCTTGTTCCCACTCGTGACAGCTATTTCATAAGATATTGTAAGCATCACCCAGATGGGGCTTGGGTGGTGGTTGATATTTCCTTGGACAATATACGACCCGGTGCTACTACAAGATGCAAAAGACGACCCTCTGGTTGTATGATTCAAGAATTGCCAAATGGTTTCTCAAAGGTTACATGGATTGAACATGTAGAAGTTGAAGACATAGAGGTGCACAATATCTTCAAACATCTAGTTAATTCGGGTTGTGCCTTTGGAGCTAAGCGATGGATAGCAACTTTAGACAGACAATGTGAACGTCTCGCTTACACAATGGCAATAAACAAACAACCAAGGGACAATGGTGGGATAACTCCTGAAGGAAGAAAAGGCTTGATGAAGTTGGCAGCGAAAGTTATGCAGAGCTATTGCAACTATGTTGGTGCTTCCCCACCACATGGTTGGACAGTACAGAAAACACCACCAGCTTGTGTTGGTGATGTGAGGATCATGACCAGAAACTATATTGTTGAATCTGGTGCACTTATCGGACTTGTTATTAGTGCTGCAACTTCTTTCTCACTTCCAGTTCCTTCCAAGAGGCTCTTTGATTTTCTTCGAAATGAGAAATCAAGAAACCAGTGGGACTTTTTCACACAAGAGGCTCAGGTTCATGAACTGGCACACATAGCAAATGGTCGTGATCCTGGAAACTATGTCTCTTTACTTTGTGCCAATAGTGCAAATGCCAACGAAAGCAGCAAGATCATAGTTCAAGAGAACTGCACTGACTATACAGGCTCATATGTGGTTTATGCTCCTATTAAATTTGATACCATGAATTTAATCTTGAGTGGGTCTAATCCAGATTATGGTACCCTTCTGTCCTCGGGCTTTGCCATTCTTCCTAATGGGCCTGGGCTGAGTGGCGAGCCCATGACTAATGTTGCATCTAGAGGATGTCTTTGTACAATTTCATATCAGACATGGGTTGAAGCAACTCTAACACCACTTCCTCCTGACGTAGTGTCCTCTTTCTGCAATTTGATGAACTACACAGTTGAAAAAATTCAAGCAGCAATGATGAGTATCAACATTTGA 2211 0.4197 MLNFEIQQVEHNMSSSWEAPLTSSQGENIRNRGGDQQSAVATLQNVVEAPPASSEGAQVQDSNQGTMRKGYKRHSHLQKKEMESFFKECPYPNEKQRSELGNLIGLNSSQIKFWFQNKHVQMKAMKERHKSTLLIAENEKLRAENLKYKEALSKAKCHGCGGSCSVGEMYFTEKYLRFENSQLKKEIENMATKIAEKLAETSFSNLPPLPLTLGPSRLLDVVNYVPQPSMAMQVHGGSDSQRSIIVTHFTESERAYIVELAISAMEEFTKMAHDGGTLWIPGIHADILNKQEYVRHFNVRLGPRPLGFRSEASRESMTVIMNPNNLIEILMDVNQWSTMFSNIVSRASIIEILSTGGARNYDGALQAMSAEFKVLSHLVPTRDSYFIRYCKHHPDGAWVVVDISLDNIRPGATTRCKRRPSGCMIQELPNGFSKVTWIEHVEVEDIEVHNIFKHLVNSGCAFGAKRWIATLDRQCERLAYTMAINKQPRDNGGITPEGRKGLMKLAAKVMQSYCNYVGASPPHGWTVQKTPPACVGDVRIMTRNYIVESGALIGLVISAATSFSLPVPSKRLFDFLRNEKSRNQWDFFTQEAQVHELAHIANGRDPGNYVSLLCANSANANESSKIIVQENCTDYTGSYVVYAPIKFDTMNLILSGSNPDYGTLLSSGFAILPNGPGLSGEPMTNVASRGCLCTISYQTWVEATLTPLPPDVVSSFCNLMNYTVEKIQAAMMSINI* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2015 736 SMART HOX_1 67 129 IPR001356 GO:0003677
Lja3g2015 736 SMART START_1 259 477 IPR002913 GO:0008289
Lja3g2015 736 MobiDBLite consensus disorder prediction 14 73 - -
Lja3g2015 736 Coils Coil 138 158 - -
Lja3g2015 736 ProSiteProfiles START domain profile. 250 480 IPR002913 GO:0008289
Lja3g2015 736 Gene3D - 306 484 IPR023393 -
Lja3g2015 736 SUPERFAMILY Bet v1-like 253 479 - -
Lja3g2015 736 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Lja3g2015 736 SUPERFAMILY Homeodomain-like 61 127 IPR009057 -
Lja3g2015 736 Pfam START domain 260 477 IPR002913 GO:0008289
Lja3g2015 736 MobiDBLite consensus disorder prediction 14 66 - -
Lja3g2015 736 CDD START_ArGLABRA2_like 257 476 - -
Lja3g2015 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 732 - -
Lja3g2015 736 SUPERFAMILY Bet v1-like 495 728 - -
Lja3g2015 736 Coils Coil 180 200 - -
Lja3g2015 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 732 IPR042160 -
Lja3g2015 736 CDD homeodomain 68 126 IPR001356 GO:0003677
Lja3g2015 736 Gene3D - 53 136 - -
Lja3g2015 736 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2015 Lja-Chr3 23449057 23452520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2015 56 731 Homeobox Transcription Factor Family AT4G04890 51.590 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g2015 START 3.4e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2015 K09338 - tcc:18597106 706.057