Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2013 ATGCCGGTGCTGCGTAGTGGAGCGCGCCGGGGCCGGGCAGCAGCGAAGCAAGGAGAGCGGCGGGAGAGTCCGGTTGAAGGTGAAGCGATTGCGACGAGGACGAGGCGGCGGCGTGCGGCGGCGGCGGCGACGAATAATAATAAGCCGCAGGAGGTTGTGGTCGATGAGAACGTAGTTGTTGTGCCGAAGAAGGAAGAAGAGAATCGGGGTGGAGCGGAGAAGGAAGTGGTTGCGGAGAAACAGATGGATGACAGTGGTGGTCGCAGCAATGATAAGGCCGTTGCCGGTGAAGATGAAAGCACCGCCCTTGTGATTCCTGATAAGGTTCAAGTAGGTAATTCCCCTTTGTATAAAGTAGAAAAAAAACTTGGCAAGGGTGGATTTGGCCAAGTATATGTAGGTCGACGTGTTTCTGGTGGAAATTTGAGTGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCAATGAAACTCGAGCATAGGACTAGTAAAGGATGTAACTATGGACCTCCCAATGAATGGCAAGTGTACAACACTCTTGGTGGAAGTCATGGGGTGCCACAAGTACATTACAAGGGCAAGCAGGGTGACTATTTCATCATGATTATGGATATGCTGGGTCCTAGCTTGTGGGATGTTTGGAATAGTAACTCTCATACCATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGAGATGTGAAGCCTGAAAATTTTCTACTTGGTGCTCCTGGTTCACCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGGTTAGCTACTAAATGGAGGGATAGTGCGACAGGTTTGCATGTGGATTATGACCAAAGGCCTGATGTTTTCAGGGGCACAGTTCGCTATGCTAGTGCCCATGCACATTTGGGAAGAACTTCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACTCTGATTTTTCTTCTTCGAGGTCGTCTCCCTTGGCAGGGATTCCAGGGAGAAAACAAAGGATTTATGGTTTGCAGGAAAAAGATGGGAACAACTCCGGAAAGTCTATGCTGCTTTTGCCCTCAGCCTTTTAGACAGTTTGTTGAGCATGTAGTGAACTTAAAGTTTGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGACGGAATTGTTGGTCCAAACCCAGATATTAGACCAATTAATACAGAAGGTGCCCAAAAGCTCATTGGTCATAAGAGAGGCCGGTTGGCAACGGAAGATGACGATGAACAACCCCAAAAGAAGATTCGTATGGGTTTGCCAGCAAACCAGTGGATTAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGATATCACTACAATGTGTCAGATACAAGGCTATCCCAGCACATTCAGAAAGGAAATGAGGATGGCTTATATATTAGCTGTGTTGCTTCTTCTATGAACCTGTGGGCCTTAATCATGGATGCGGGGACAGGTTTCACTTCTCAAGTCTATGAACTTTCCCCTTTTTTTCTCCACAAGGAATGGATCATGGAGCACTGGGAAAAAAATTACTACATCAGCGCTATTGCTGGAGCTGTGAATGGGAGTTCATTAGTAGTAATGTCTAAGGGCACACCATATACGCAGCAATCGTACAAAGTTAGTGATTCATTTCCTTTCAAGTGGATTAACAAAAAGTGGCGGGAGGGCTTTTACGTTACTGCAATGGCCACCTCGAGCATCAGATGGGGAGTAGTTATGTCTCGCGGTGCAGGATTTTCAGACCAGGTTGTTGAACTAGATTTTCTGTATCCTAGCGAAGGGATTCACAAGCGGTGGGATTGTGGATACCGAATCACATCGACTGCTGCAACTGCAGACCAAGCTGCTTTTGTCTTGAGCGTGCCTAGGAGGAAACCCACAGATGAAACTCAGGAAACACTAAGGACCACTGCTTTTCCTAGTACACATGTCAAGGAGAAATGGGCGAAGAACCTGTACATTGCTTCTGTTTGCTACGGACGCACAGTTTCTTGA 2043 0.464 MPVLRSGARRGRAAAKQGERRESPVEGEAIATRTRRRRAAAAATNNNKPQEVVVDENVVVVPKKEEENRGGAEKEVVAEKQMDDSGGRSNDKAVAGEDESTALVIPDKVQVGNSPLYKVEKKLGKGGFGQVYVGRRVSGGNLSERTGPGAVEVAMKLEHRTSKGCNYGPPNEWQVYNTLGGSHGVPQVHYKGKQGDYFIMIMDMLGPSLWDVWNSNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGAPGSPDEKKLFLVDLGLATKWRDSATGLHVDYDQRPDVFRGTVRYASAHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFMVCRKKMGTTPESLCCFCPQPFRQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLATEDDDEQPQKKIRMGLPANQWISVYNARRPMKQRYHYNVSDTRLSQHIQKGNEDGLYISCVASSMNLWALIMDAGTGFTSQVYELSPFFLHKEWIMEHWEKNYYISAIAGAVNGSSLVVMSKGTPYTQQSYKVSDSFPFKWINKKWREGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATADQAAFVLSVPRRKPTDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTVS* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2013 680 ProSitePatterns Protein kinases ATP-binding region signature. 123 156 IPR017441 GO:0005524
Lja3g2013 680 SUPERFAMILY Protein kinase-like (PK-like) 117 397 IPR011009 -
Lja3g2013 680 ProSiteProfiles Protein kinase domain profile. 117 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2013 680 CDD STKc_CK1 117 393 - -
Lja3g2013 680 Pfam Protein kinase domain 117 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2013 680 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 ISOFORM X1 73 654 - -
Lja3g2013 680 PANTHER CASEIN KINASE-RELATED 73 654 - -
Lja3g2013 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Lja3g2013 680 SMART serkin_6 117 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2013 680 MobiDBLite consensus disorder prediction 64 95 - -
Lja3g2013 680 MobiDBLite consensus disorder prediction 1 50 - -
Lja3g2013 680 Gene3D Transferase(Phosphotransferase) domain 1 81 436 - -
Lja3g2013 680 MobiDBLite consensus disorder prediction 12 35 - -
Lja3g2013 680 MobiDBLite consensus disorder prediction 64 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2013 Lja-Chr3 23414151 23419221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2013 117 336 EF-hand Containing Proteins AT4G36070 25.893 1.84e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lja3g2013 Pkinase 3.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2013 - - gmx:100799630 1157.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2013 3 23414151 23419221 Lja3g2013 3 23414151 23419221 ECH