Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2004 ATGATTCCTTTAGCAAAACCCCAATGGAAGTTTCTCCTCCTTTTTCTGGTTTTCATTCATTTCAAGAGAACCAGTTCTTACCCTATGGAACCCATGAACTGTACGGACACAAGCCGTGTCTGCACTTCTTTCATGGCCTTTAAGCCTCAACCGAAGCAGACACTGGCGGAGATACAGAGCATGTTTGATGTGTTGCCTGGTGACATCACTGTTGAAGGCAATGGCTGGGACTACATGTTCATCAGGAAGAATTGTTCTTGTGCTGCTGGTATCAAGAAATATGTGTCTAACACCACCTTCACTGTGAAATCTAATGAAGGGTGGGTGTATGATTTGGTAATGGATGCCTATGATGGGCTTGTGATCCTTCCTAATACCACAAGGAGGGCAAGGAATGGTGCTGTTATCTCTCTGAGGTTGTTCTGTGGCTGTTCCAGTGGACTTTGGAACTATCTGATGAGTTATGTGATGACAGATGGGGATAGTGTCGAATCTCTGGCGAGCAGATTCGGGGTTAGTATGGGCAGCATTGAGTCTGTAAATGGCATTGGTGATCCTGATAATGTGACTGTGGGCTCACTTTATTACATACCTATGAATTCGGTTCCTGGTGATCCTTATCCCCTGAAGAATGCTTCTCCACCAGCTCCTGTTCCTACCCCATCTGTTGATAATTTTTCAGGTGATCAAGTCGATCATAAGGCTCATGTACCATATGGATGGATTATTGGGGGTCTAGGAGTTGGTCTTTTTCTGATAATATTAAGCGTAATGCTCTGTGTTTGTATGAGATCATCAAGTTGTTTTGGTGAAGCCAGAAGTCATGAAAAAGATGCTGACGGAAAGATCTCTCATAAATTCCATATTCTTCGGAATCCAAGTTTCTTTTGTGGTTCCGGAAGGTACATCTGTGGCAAACATGTAGGCCAGAAGCAAAAAGATGGTGAATCCAGCAATCACACGATTACCATTCCCAAAGCTTCAACTTTGGGGCCTGACATATTTGACATGGATAAGCCTGTAGTTTTTACATACGATGAGATTTTCCCCTCAACTGATGGATTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGATCTGTTTACTATTGCCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATGACTGCTACAAAAACAAAAGAATTTATGGCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCAAGTCATGATGAGTTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTCAGAAGCCATTTGCATGATCCTCAAAATAAGGGGCATTCCCCTCTTTCTTGGATCATGAGGGTGCAGATCGCACTTGACGCTGCAAGGGGCCTTGAATACATTCATGAACACACAAAAACTCATTATGTCCACCGTGATATCAAGACAAGCAACATTTTACTGGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGATTAGCAAAACTTGTTGGGAAAACAAATGAAGGAGAAGTATCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATACTTGAGTAATGGCCTTGCAACTACCAAAAGTGATGTATATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATCATTCGAACAGAAGGCACAGTGACAAAAAATCCGGAAAGACGTTCACTGGCTTCAGTAATGTTGGCAGCTCTTAGGAACTCACCTGATTCCATGAGCATGTCAGGCGTGAGAGATTATATTGATCCAAATATGATGAATCTGTATCCCCATGATTGTGTATTTAAGATGGCCATGCTGGCAAAGCAATGCGTGGACGATGATCCAATCTTACGACCTGATATGAAGCAGATTGTGATTTCTCTCTCACAGATTCTCCTTTCTACTGTTGAGTGGGAAGCCACTCTAGCTGGGAATAGCCAAGTATTCAGTGGCCTTGTTCAGGGAAGATAG 1998 0.4214 MIPLAKPQWKFLLLFLVFIHFKRTSSYPMEPMNCTDTSRVCTSFMAFKPQPKQTLAEIQSMFDVLPGDITVEGNGWDYMFIRKNCSCAAGIKKYVSNTTFTVKSNEGWVYDLVMDAYDGLVILPNTTRRARNGAVISLRLFCGCSSGLWNYLMSYVMTDGDSVESLASRFGVSMGSIESVNGIGDPDNVTVGSLYYIPMNSVPGDPYPLKNASPPAPVPTPSVDNFSGDQVDHKAHVPYGWIIGGLGVGLFLIILSVMLCVCMRSSSCFGEARSHEKDADGKISHKFHILRNPSFFCGSGRYICGKHVGQKQKDGESSNHTITIPKASTLGPDIFDMDKPVVFTYDEIFPSTDGFSDSNLLGHGTYGSVYYCLLRDQEVAIKRMTATKTKEFMAEIKVLCKVHHANLVELIGYAASHDEFFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNEGEVSTTKVVGTYGYLAPEYLSNGLATTKSDVYAFGVVLFEIISGKEAIIRTEGTVTKNPERRSLASVMLAALRNSPDSMSMSGVRDYIDPNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQIVISLSQILLSTVEWEATLAGNSQVFSGLVQGR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2004 665 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Lja3g2004 665 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
Lja3g2004 665 CDD STKc_IRAK 361 640 - -
Lja3g2004 665 SUPERFAMILY LysM domain 153 199 IPR036779 -
Lja3g2004 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 665 IPR044812 GO:0019199|GO:0045087
Lja3g2004 665 ProSitePatterns Protein kinases ATP-binding region signature. 361 382 IPR017441 GO:0005524
Lja3g2004 665 SUPERFAMILY Protein kinase-like (PK-like) 334 637 IPR011009 -
Lja3g2004 665 PANTHER BNAA06G02020D PROTEIN 32 665 - -
Lja3g2004 665 Gene3D LysM domain 150 204 IPR036779 -
Lja3g2004 665 Pfam LysM domain 159 192 IPR018392 -
Lja3g2004 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2004 665 SMART serkin_6 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2004 665 Gene3D Phosphorylase Kinase; domain 1 331 426 - -
Lja3g2004 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Lja3g2004 665 Pfam Protein tyrosine and serine/threonine kinase 359 635 IPR001245 GO:0004672|GO:0006468
Lja3g2004 665 SMART LysM_2 154 198 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2004 Lja-Chr3 23205689 23213873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2004 30 665 Receptor kinase-like Gene Family AT1G51940 68.168 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja3g2004 PK_Tyr_Ser-Thr 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2004 - - gmx:100796989 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2004 3 23205689 23213873 Lja3g2004 3 23205689 23213873 ECH
Lja3g5073 3 92998809 93002526 Lja3g2004 3 23205689 23213873 PCT