Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2002 ATGTGGAATGAAAGCCAAAATTCTTCAGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGCCAATCAATGAAAACATGAAAAGTGTTAACAGAGAAAGAGGAGAATCACCACTCACTCTTGGTTACTCCACATGCCATCAACAACATAGTCCTCACCAGGCTAAAGCTAAAGCTTCATCATTTCTTCAGCTCTCATCAAGCCCACAGAACATGCCAGTGATTAGAAAGAACGTTTCACAACCCTGTGGTGAAGACTTGCTGAATGCAGAGAAGAATACATTTTCAATATCTTCTGCAAATACAGCAGTGCTCAATAGGTCCCAGAAAAGAACTGCTTCTGGTTCAGTAGTGGGTTGGCCTCCAATTCGTTCGTGCAGGAAGAACCTTGCAAGTGGAAGCTCTTCTAAGCCGCCTTCCGGGTCCCGACAACACCAGCATCATGTGGTTCCAGACAAGGTTGCTGGTAAGAAACCTGTTGAAACCTCTGATAAAGCTTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACATCAATGCTTATAACAGCTATGAAAAACTTTCCTATGCTGTTGATGAGCTATTTAGAGGCCTGCTTGCTGATTCCTCAGCTGGTGGAATTCACAACAAGCTGCAGAAAGTGGAAGAGAAAGGCATAATGGGTTCTTTGATTGGAAGTGGGGAATATACTCTTGTGTATGAGGATAATGAAGGAGACAGGATGCTTGTTCAGGATGTGCCATGGCACATATTCGTATCAACAGTGAAGAGGCTGCGGGTGTTGAAGATCTTTTTTTTGGGTACAAAACAGCCGAATAGTGAGCATAAGCATTGGATTTGA 867 0.436 MWNESQNSSEERKLELRLGPPGEEPINENMKSVNRERGESPLTLGYSTCHQQHSPHQAKAKASSFLQLSSSPQNMPVIRKNVSQPCGEDLLNAEKNTFSISSANTAVLNRSQKRTASGSVVGWPPIRSCRKNLASGSSSKPPSGSRQHQHHVVPDKVAGKKPVETSDKALFVKINMDGVPIGRKVDINAYNSYEKLSYAVDELFRGLLADSSAGGIHNKLQKVEEKGIMGSLIGSGEYTLVYEDNEGDRMLVQDVPWHIFVSTVKRLRVLKIFFLGTKQPNSEHKHWI* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2002 288 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 4 276 - -
Lja3g2002 288 SUPERFAMILY CAD & PB1 domains 166 270 - -
Lja3g2002 288 MobiDBLite consensus disorder prediction 44 59 - -
Lja3g2002 288 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 276 IPR003311 GO:0005634|GO:0006355
Lja3g2002 288 Pfam AUX/IAA family 14 271 IPR033389 -
Lja3g2002 288 Gene3D - 163 276 - -
Lja3g2002 288 MobiDBLite consensus disorder prediction 1 59 - -
Lja3g2002 288 MobiDBLite consensus disorder prediction 131 159 - -
Lja3g2002 288 ProSiteProfiles PB1 domain profile. 169 277 IPR000270 GO:0005515
Lja3g2002 288 MobiDBLite consensus disorder prediction 131 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2002 Lja-Chr3 23173234 23177002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2002 154 269 B3 DNA Binding Superfamily AT4G23980 31.897 8.36e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja3g2002 AUX_IAA 2e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2002 K14484 - gmx:100793822 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2002 3 23173234 23177002 Lja3g5072 3 92974097 92978813 ECH
Lja3g2002 3 23173234 23177002 Lja3g2002 3 23173234 23177002 ECH
Lja3g5072 3 92974097 92978813 Lja3g2002 3 23173234 23177002 PCT