Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1999 ATGGGAAAAGCTAGTAGATGGTTGAAGGGGTTGTTGGGGATGAAGAAGGAGAAAGACCACAGTGGCAATTTGGCTCCTGACAAGAAAGAAAAGAGAAGGTGGAGTTTTGCAAAGTCAGGGAAAGATGTGCCTGCATCACCAAACATTAGTCCCACATCGGCCACTGATAATCCCTGGCTCAGATCCTATATTGCTGAATCAGAGAGCCAGCAAAACAAGCATGCCATTGCGGTGGCTGCTGCCACCGCCGCCGCCGCAGATGCTGCTGTCGCCGCCGCTCAGGCGGCTGTGGCAGTGGTGAGGCTGACTAGTCAGGGCAGAGACTCCTTGTTCAGTGGAAGCAGAGAGAAGTGGGGTGCTGTCAAGATCCAAACTTTCTTCAGAGGCTATTTGGCGCGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGCTATCTAGTTAGGAAGAGGGCTGCTGCAACTCTTCATAGTATGCAAGCTCTAATAAGAGCTCAAGCTGCTGTTAGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGAAAATAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAGCGATTTGAGGAAACAAGGAGTGAATTCCACAGCAAAAGGCTACCTACATCTTATGAAACATTTGATGAGAGCCCCAAAATTGTTGAAATTGACACTTACAAGACTAGATCAAGATCGAGGCGCTTCACCACTACGATGTCTGAGTGTGGAGAGGACCTGCCCTGTCACGGGATCTCGTCGCCTCTTCCTTGTCCAGTCCCCGGCCGATCCCCGGCTCCTGATTGCCAGCATGTTCAGGATTTCGATTGGTACTTCAATGTTGATGAGTGCAAATTCTCCACAGCACACAACACCCCTCGATTCGCAAATTTCGTGCGTGCTAAAACTCCAGCTACGCCGGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGGCCTTACTCCAATTTTCCTAACTACATGTCCAATACTCAGTCATTTAAGGCAAAGCTAAGGTCTCACAGTGCTCCAAGGCAAAGACCTGAAGCCAAGAAGAGGCTTTCGCTCAATGACATGATGGCGGCGAGAAATAGCATAAGTGGTGTTAGAATGCAAAGGCCATCTCATTTGCAAACTCAGGATGAAATAGAATCCTGGAATTTATGA 1185 0.4827 MGKASRWLKGLLGMKKEKDHSGNLAPDKKEKRRWSFAKSGKDVPASPNISPTSATDNPWLRSYIAESESQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRDSLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQAAVRTQRARRSMSKENRFLPEVLARKSVERFEETRSEFHSKRLPTSYETFDESPKIVEIDTYKTRSRSRRFTTTMSECGEDLPCHGISSPLPCPVPGRSPAPDCQHVQDFDWYFNVDECKFSTAHNTPRFANFVRAKTPATPAKSVCGDTFFRPYSNFPNYMSNTQSFKAKLRSHSAPRQRPEAKKRLSLNDMMAARNSISGVRMQRPSHLQTQDEIESWNL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1999 394 PANTHER IQ-DOMAIN 5-RELATED 1 383 - -
Lja3g1999 394 ProSiteProfiles IQ motif profile. 164 193 IPR000048 GO:0005515
Lja3g1999 394 MobiDBLite consensus disorder prediction 375 394 - -
Lja3g1999 394 Pfam Protein of unknown function (DUF4005) 300 373 IPR025064 -
Lja3g1999 394 MobiDBLite consensus disorder prediction 10 38 - -
Lja3g1999 394 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Lja3g1999 394 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Lja3g1999 394 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Lja3g1999 394 Pfam IQ calmodulin-binding motif 143 157 IPR000048 GO:0005515
Lja3g1999 394 MobiDBLite consensus disorder prediction 1 54 - -
Lja3g1999 394 PANTHER PROTEIN IQ-DOMAIN 14-LIKE 1 383 - -
Lja3g1999 394 Gene3D - 59 142 - -
Lja3g1999 394 SMART iq_5 138 159 IPR000048 GO:0005515
Lja3g1999 394 SMART iq_5 115 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1999 Lja-Chr3 23134978 23137297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1999 1 377 IQD Protein Family AT3G16490 55.330 1.92e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1999 - - gmx:100797686 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1999 3 23134978 23137297 Lja3g1999 3 23134978 23137297 ECH
Lja3g5071 3 92950367 92952632 Lja3g1999 3 23134978 23137297 PCT