Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1990 ATGTTCTATCTTCGCACCTACCCTCTCGTTGACCCAAAACCGGCTGTCGACCACGACAGGGCCTCCGCCGACCTTTCTCCGGCGAGCGTCACCTATGTTCTACCCACTTCGACTGTCTTCTCATCTGTTATATCATCTGTCAGCTTGGACTCTTCACTGAAATCAAAATACCGAGCATTCAGTTACACTGAGATTCTCAATATTACGGATAACTTAAAAAATATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCATTCTTCAAGATCAAACCGAAGTCGCTGTTAAGATTCATTCACGAACTTCAACGCAAGGATATAGGGAGTTTATGTCAGAGGCACAGCTTCTGATGACTATTCATCATAGAAATTTGGTATGTCTCATTGGCTATTGCAATGAAGGTGAAATTAAAGCGTTGATATATGAGTACATGGCCAAAGGAGATCTCCAACAGCACTTGTCAGTGAAAAACCCAAATGCCTTAAACTGGAATAAGAGACTTAATATCGCAGTTGAAGCAGCACAGGGACTTGATTATCTCCATAATGGTTGCAAGCCACCCCTTCTCCATAGAGATTTGAGGACTTCCAACATATTACTTGATCTGAACATGCATGCCAAGATAGCTGATTTTGGTCTATGTAGAGCTTTTGGTAATGATGTTGATTCTCATATATCGACTCGCCCTGCAGGTACACCAGGTTATAGTGATCCAGAAACTGGAAACTTAAATAAGCAAAGTGATATCTACAGCTTTGGGATAATTCTATTTGAGTTAATCACTGGCCAAAGAGCACTAGTGAGAGAAAATGAAAAAAATATTCACATACTTCAAAGGGTTATTCCCATAATTGAAGGAGGAGACATTCAAAATACTGTTGATCCGAGGTTGCAGGGAGAGTTCAGCATCAGTTCTGCATGGAAAGCTGTAGAGATTGCCATGTCATGCATTTCGCCAACGGTGGCTCAAAGGCCAGACATTAGCCAAATATTGGCGGAGCTAAAGGAATGTCTTTCTTTGGACATGGTTCAAAGAAATAGCGAAGTAGTAACAACTACTGTGGAATGGACTTCTATGCAGATAGAGATAGAAACAAGAAGAGTGGAATCGACTTCTACGCAGATAGAGACAGAAACAACTCCCTTAGCTAGGTAG 1161 0.4126 MFYLRTYPLVDPKPAVDHDRASADLSPASVTYVLPTSTVFSSVISSVSLDSSLKSKYRAFSYTEILNITDNLKNIIGEGGFGKVYFGILQDQTEVAVKIHSRTSTQGYREFMSEAQLLMTIHHRNLVCLIGYCNEGEIKALIYEYMAKGDLQQHLSVKNPNALNWNKRLNIAVEAAQGLDYLHNGCKPPLLHRDLRTSNILLDLNMHAKIADFGLCRAFGNDVDSHISTRPAGTPGYSDPETGNLNKQSDIYSFGIILFELITGQRALVRENEKNIHILQRVIPIIEGGDIQNTVDPRLQGEFSISSAWKAVEIAMSCISPTVAQRPDISQILAELKECLSLDMVQRNSEVVTTTVEWTSMQIEIETRRVESTSTQIETETTPLAR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1990 386 SMART tyrkin_6 70 336 IPR020635 GO:0004713|GO:0006468
Lja3g1990 386 ProSitePatterns Tyrosine protein kinases specific active-site signature. 190 202 IPR008266 GO:0004672|GO:0006468
Lja3g1990 386 Gene3D Phosphorylase Kinase; domain 1 51 145 - -
Lja3g1990 386 Gene3D Transferase(Phosphotransferase) domain 1 146 360 - -
Lja3g1990 386 ProSiteProfiles Protein kinase domain profile. 70 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1990 386 Pfam Protein tyrosine and serine/threonine kinase 72 336 IPR001245 GO:0004672|GO:0006468
Lja3g1990 386 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 44 367 - -
Lja3g1990 386 SUPERFAMILY Protein kinase-like (PK-like) 49 336 IPR011009 -
Lja3g1990 386 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Lja3g1990 386 PANTHER OS07G0107800 PROTEIN-RELATED 44 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1990 Lja-Chr3 22990592 22993856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1990 45 386 Receptor kinase-like Gene Family AT2G04300 46.705 2.25e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Lja3g1990 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1990 - - mtr:MTR_8g015040 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1990 3 22990592 22993856 Lja3g1990 3 22990592 22993856 ECH