Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1987 ATGGCGACGCCGGCGGCAATGTTGGAGGGAGTAGCGCCGCCGCAACCTCCGGGGACGGACATGACCGGAATATGCTTCCGGGACCAACTGTGGCTCAACACGTACCCTCTGGATCGCAACCTCGTGTTCGATTACTTCGCCCTCTCCCCGTTCTACGATTGGACCTGCAACAACGAGCAACTCCGAATGCGCTCTCTCCACCCTCTCGATCTCTCTCAACTCACGAAAATGACAGGCACTGAATTTGTGCTCAGTGAAGTCATGGAACCCCACCTTTTTCTTATTCGCAAGCAAAAGAGGGATAGCCCTGACAAAGTTACGCCAATGCTTGCTTATTACATCTTGGATGGTTCAATTTACCAGGCTCCACAACTATGCAATGTTTTTGCCGCTCGAATTGGAAGGGCACTCTATTATATAGAAAAAGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATAGGATATGCTGGACCAGTTGACTCTGAAACTGAGACTGCATCGCTGGAATCAAAGGTTGCTAAGGAGACAATTGACCTAAAGGAAGTTAAGCGAGTGGATCATATTCTTGCATCCTTGCAACGCAAGCTACCACCAGCTCCACCTCCACCACCTTTCCCAGAAGGGTATGTGCCACCTTCAACAGCTGAAACTGAGAAAGGCACTGAAACTCAGGAATCAGCAGAGCCACAAGCTCCTCAAGTTGATCCTATAATTGATCAAGGACCTGCAAAAAGAATGAAATTTTGA 750 0.4853 MATPAAMLEGVAPPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSLHPLDLSQLTKMTGTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALYYIEKAFTTAASKLEKIGYAGPVDSETETASLESKVAKETIDLKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGTETQESAEPQAPQVDPIIDQGPAKRMKF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1987 249 MobiDBLite consensus disorder prediction 194 249 - -
Lja3g1987 249 Pfam MED6 mediator sub complex component 24 149 IPR007018 GO:0003712|GO:0006357|GO:0016592
Lja3g1987 249 Gene3D Mediator complex, subunit Med6 18 147 IPR038566 -
Lja3g1987 249 MobiDBLite consensus disorder prediction 196 211 - -
Lja3g1987 249 PIRSF MED6_meta/plant 11 249 IPR016820 GO:0003712|GO:0006357|GO:0016592
Lja3g1987 249 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 11 249 - -
Lja3g1987 249 MobiDBLite consensus disorder prediction 217 231 - -
Lja3g1987 249 PANTHER MED-6-RELATED 11 249 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1987 Lja-Chr3 22924620 22927977 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Lja3g1987 Med6 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1987 K15128 - gmx:100792248 434.491