Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1986 ATGTCGGATTCTTGGACTCCAGCCCAAGACCGGGCTTTAGAGCTAGCCCTCGCAACTGTCCCTGATGATGCGCCAGACCGGTGGGAACAAATTGCCGCTGCAGTTGGTCGTCTGCCAGCGGAGATCATGGAAAGGTATCGATTGCTCGTACTTCACGTTGATAATATTGAAGAAGGTCCTGCTCCAGATTTCATTGTAGATAGGGTTCCAGAGCCAGTTCCAAACGATCCTAGTAGTTCACAAAAAATCACAAAGAAGATCTCTCCTAATATTGAAGAAGGTCCTGCTCCAGATTTCATTGTAGATAGGGTTCCAGAGCCAGTTCCAAACGATCCTAGTAGTTCACAAAAAATCACAAAGAAGATCTCTCCTAATCAAAATGAGAAAAGAGTACTATGGACTGACGATGAACACAGGAATTTTCTGAGGGGGCTTAAGAAATATGGCAAAGGACAATGGCAAACCATCTCAAGAGAATTTCTCCCATCAAAAACTCCAACTCAAATTGCTAGTCATGCTCAAAAGTATTATCTTCGCCTGAATAGTACACCAAAAAGGAGAAAAAGGGCAAGCATCCATGACCTAACCATTGATGACACTGACTTGGTTCCTCAACAAAATCAAGTTCCTCAATTAAACGCTCCAATGCAGGAATTATCCCCTCAGCAAAATGGGGTACAATTGGATGCTCCAATGCAGCAAGTATCCTCTCAGCAAAATCAAGTTGATGCATTGGACTTTCCAATGCAGCAATTATCCTTTCAGCAAAATGGGGATCCTCCTTTGAATTTCCCACATCAAGTATTCCCTCAGCAAAATTGTGCTACTCCTTTGAATGTGCAGCAACTATCCTTTCAGCAAAATGGAGATCCTCCCCTGAATTTTCCACATCAAGTATACCCTCAGCAAAATTGTGCTACTCCTTTGAATGTGCAGCAACTATCCTTTCAGCAAAATGGGGATCCTCCGTTGAATTTTCCACATCAAGTATACCCTCAGCAAAATTGTACTACTCCTTTGAATGTGCAGCAACTATCCTTTCAGCAAAATGGGCATCCTCCTTTGAATTTTCCAATGCAACAATTACAAGAAATTCAACAAAGTGGTTTGGCCTCTCAGCAACATATGGTTCCTCCTTTGGATGCTCCAATGCAGCAATTACAAGAAAGGCAACACACCTTAGGGGATAGTGGCTTGACCTCTCAGCAGCTTATGGTTCCTCCTTTGGATGCTCCAATGCAGCAATTACAAGAAAGGAAACACACCTTAGGGGATAGTGTCTTGGCCTCTCAGCAACATCCAGTTCCTCCTTTGGAAGTAATGCCAATGCAGCAATTACAAGAAAGGCCTCAAGAACATCAAGCGGTCAATTCGAGACATTTTGTTTGGAAACCCGTTGGCAACCGTGGACGTTAG 1416 0.4336 MSDSWTPAQDRALELALATVPDDAPDRWEQIAAAVGRLPAEIMERYRLLVLHVDNIEEGPAPDFIVDRVPEPVPNDPSSSQKITKKISPNIEEGPAPDFIVDRVPEPVPNDPSSSQKITKKISPNQNEKRVLWTDDEHRNFLRGLKKYGKGQWQTISREFLPSKTPTQIASHAQKYYLRLNSTPKRRKRASIHDLTIDDTDLVPQQNQVPQLNAPMQELSPQQNGVQLDAPMQQVSSQQNQVDALDFPMQQLSFQQNGDPPLNFPHQVFPQQNCATPLNVQQLSFQQNGDPPLNFPHQVYPQQNCATPLNVQQLSFQQNGDPPLNFPHQVYPQQNCTTPLNVQQLSFQQNGHPPLNFPMQQLQEIQQSGLASQQHMVPPLDAPMQQLQERQHTLGDSGLTSQQLMVPPLDAPMQQLQERKHTLGDSVLASQQHPVPPLEVMPMQQLQERPQEHQAVNSRHFVWKPVGNRGR* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1986 471 SMART sant 129 179 IPR001005 -
Lja3g1986 471 SMART sant 1 52 IPR001005 -
Lja3g1986 471 ProSiteProfiles SANT domain profile. 133 181 IPR017884 -
Lja3g1986 471 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Lja3g1986 471 SUPERFAMILY Homeodomain-like 3 53 IPR009057 -
Lja3g1986 471 Pfam Myb-like DNA-binding domain 132 176 IPR001005 -
Lja3g1986 471 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 222 IPR043363 -
Lja3g1986 471 SUPERFAMILY Homeodomain-like 127 182 IPR009057 -
Lja3g1986 471 Gene3D - 132 182 - -
Lja3g1986 471 Gene3D - 3 53 - -
Lja3g1986 471 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 179 IPR006447 GO:0003677
Lja3g1986 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 181 IPR017930 -
Lja3g1986 471 ProSiteProfiles Myb-like domain profile. 125 177 IPR001005 -
Lja3g1986 471 MobiDBLite consensus disorder prediction 64 84 - -
Lja3g1986 471 CDD SANT 133 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1986 Lja-Chr3 22911097 22913429 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g1986 Myb_DNA-binding 4.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1986 - - lja:Lj1g3v4024040.1 798.505