Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1985 ATGATGGAAGGAGGAACGCCGCCGCAACCTCCGGGGATGGACATGACTGTGGCTCAACACGTACCCCTTGGATCGCAACCTCGTCTTCGATTACTTCGCCCTCTCCCCTTTGATTGGACCTGCAACAACGAGCAACTCCGAATACGCTCTCTCCACCCTCTCGATCTCTCTCAACTCACTTATGGAACCCCCATCTTGGATGGTTTAATCTACCAGGCTCCACAACTATGCAATGTTTTCGCCACTCGAATCGGAAGGGCACTCTATTATATACAAAAAGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATAGGATATGATGGATCAGTTGACTCTGAAAATGAGACTGCATTGCTGGAATCAAAGGTTGCTAAGGTGACAATTGACCTAAAGGAAGTTAAGCGAGTGGATAATATTCCTGCATCCTTGCAACACAAGATCAATTCAAAATTTAGAAGCCTTGCAGAAGTATAA 477 0.4591 MMEGGTPPQPPGMDMTVAQHVPLGSQPRLRLLRPLPFDWTCNNEQLRIRSLHPLDLSQLTYGTPILDGLIYQAPQLCNVFATRIGRALYYIQKAFTTAASKLEKIGYDGSVDSENETALLESKVAKVTIDLKEVKRVDNIPASLQHKINSKFRSLAEV* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1985 158 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 64 149 - -
Lja3g1985 158 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 37 60 - -
Lja3g1985 158 PANTHER MED-6-RELATED 64 149 IPR007018 GO:0003712|GO:0006357|GO:0016592
Lja3g1985 158 PANTHER MED-6-RELATED 37 60 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1985 Lja-Chr3 22907471 22911088 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Lja3g1985 Med6 0.0001 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1985 K15128 - gmx:100792248 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1985 3 22907471 22911088 Lja3g1985 3 22907471 22911088 ECH