Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1984 ATGTTGAATCGGTGGACTTCGGCCGAAGATCGGGCTTTTGAGCGAGCCCTCGGAACCCTCTCTGATGATGCCAATCCGGAAGACCATTTGGAACGAATTGCCGATGCACTTGGTCGTCCGCTGGAGGAGATCAAGGAAAAGTATAAATTGCTCGCACATGACGTTGAAAATATTGAAGAAGGTCATGCTCCAGATTACATTGACGATTGGGTTCCAGAGCCAATTGCAAAAGACTCTACTAGTTCACAAAAGCACACAAAGAAGACCTCTCCTAAAAGTGAGAAAAAAGTATCATGGACTAGAGAAGAACACCAAAATTTTCTTAGGGGGCTTCAGAAATATGACAAAGGACAATGGAAAACCATCTCAAAAGAATGTCTCCCAACAAAAACTCCAACTCAAATTGCTAGTCATGCTCAAAAGTATTATCTTCGCTTGAATAGTACACCAAAAGGGAGAAAAAGAGGAAGCATCCATGACCAAACCATTGATGACACTAACTTGGTTCCTCAACAAAATCAAGTTCCTCAATTGAATGCTCCGTTGGAGCAAAATTGGGTACAATTGGATGCTCCAATGCAGCAATTATCCTCTCAGCAAAATCAAGTTGATGCAATGGACTTTCCAATGCAGCAATTATCCTTTCAGCAAAGTGGGGATCCTCCTTTGAATTTTCCACATCAAGTATACCCTCAGCGAAGTTCTGCTCCTCCTTTGAATGTGCAGCAACTGTCCTATCAGCAAAATGGGCATCCTCCTGTGAATTTTCCAATGCAACAATCACAAGAAATACAACAAAGTGATTTGGCTTCTCAACAATATTTGGTTCCTCCTTTGGATGCTCCAATGCAGCAAGTGCAAGAAAGGCAACACACCTTAGGGGATAATGTCTTGGCCTCTGAGCAACATGTGGTTCCTGCTTCGGAAGTAATGCCAATGCAGCAATTGCAAGAGAGGCCTCAAGAACATCAAGCTATCGATTCGAGACATTTTGCTTGGAAACCCGTTGGTAACCATGGACGTTAG 1026 0.4298 MLNRWTSAEDRAFERALGTLSDDANPEDHLERIADALGRPLEEIKEKYKLLAHDVENIEEGHAPDYIDDWVPEPIAKDSTSSQKHTKKTSPKSEKKVSWTREEHQNFLRGLQKYDKGQWKTISKECLPTKTPTQIASHAQKYYLRLNSTPKGRKRGSIHDQTIDDTNLVPQQNQVPQLNAPLEQNWVQLDAPMQQLSSQQNQVDAMDFPMQQLSFQQSGDPPLNFPHQVYPQRSSAPPLNVQQLSYQQNGHPPVNFPMQQSQEIQQSDLASQQYLVPPLDAPMQQVQERQHTLGDNVLASEQHVVPASEVMPMQQLQERPQEHQAIDSRHFAWKPVGNHGR* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1984 341 MobiDBLite consensus disorder prediction 80 101 - -
Lja3g1984 341 Gene3D - 97 148 - -
Lja3g1984 341 Coils Coil 41 61 - -
Lja3g1984 341 CDD SANT 98 142 IPR001005 -
Lja3g1984 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 147 IPR017930 -
Lja3g1984 341 Gene3D - 3 64 - -
Lja3g1984 341 Pfam Myb-like DNA-binding domain 96 142 IPR001005 -
Lja3g1984 341 ProSiteProfiles SANT domain profile. 94 147 IPR017884 -
Lja3g1984 341 SMART sant 95 145 IPR001005 -
Lja3g1984 341 SMART sant 1 54 IPR001005 -
Lja3g1984 341 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Lja3g1984 341 MobiDBLite consensus disorder prediction 70 101 - -
Lja3g1984 341 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 3 205 - -
Lja3g1984 341 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 205 IPR043363 -
Lja3g1984 341 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 145 IPR006447 GO:0003677
Lja3g1984 341 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1984 Lja-Chr3 22881081 22882959 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g1984 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1984 - - lja:Lj1g3v4024040.1 366.696