Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1980 ATGGTACTCACATCTTGTCCCCCTAAACAAACAAAGATGGCATTGTTTTTGCATTTTCTTCTGGTATTGCTTGGGGTCCTCATGGCAAAAGCTGAGGATCAATCAGGATTTATCAGCATAGATTGTGGGCTACCTGAAAATTCAAGCTACACTGAGAAAACCACAGGCATAAACTACATTTCAGATGCTAAGTTCATAGATACTGGTGTAAGCAAGAGCATATCACCAGCAGAGAAAGTCACTCTTCAACAGCAACTAGCATATGTAAGGAGCTTTCCAAGGGGAGTGAGAAACTGTTACAGAATAAATGTAACCAGGGGTACTAAGTATTTAATCAGAGCTTCTTTCTATTATGGAAACTATGATGAATTAAATGAGTTACCACAATTTGAACTCCATCTTGGAGCTAATATTTGGGACACAGTGACATTCCCCAATGATTCACTCACCACAATCAGTGAGATTGTATACACCCCATCACTATATTATATACATGTGTGCCTAGTTAACACAGGCACTGGGACTCCATTCATTTCAGCCATTGAATTGAGACCTTTGAACAATGGTACTTATAACATTGACTCAGCTGGAACATTGGCACGCCTCCGGAGATACGATTTAGGTTCCATCTCCAACTCGGAGTACAGGTTCAAAGATGATGTTTATGACAGAATCTGGGCACCTCTTCCTTTCAAACGGTGGACACAATTAAGCACTTCACTAAGACCTGATGATCTAGCTCAGAATGATTATAAACTACCAGCAGTTGTTATGAGCACTGCCGCGACCTCAGTGAATGCCAGCGCTCCATTTCAGTTCTATTGGGATCCAGATAATGCAAAGGAACAATACTACATCTACATGCACTTCAATGAGGTTGAAAAGCTTGCACCGAATGAAACTAGAGCATTCAATATCACCTTGAATGGTAAATATTGGTATGGACCTGTGGTACCTCAATACCAGGTAATAAATACCATATATAATCAAGCAGCTTTGACTGGAGCCACAAGGTACCTGTTTTCTTTAGTTCAGACAGAGAATTCTACCCTTCCACCCATCCTCAATGCCTTCGAGATTTATATAGTAAAAGATTTCTCACAATCAGAAACAGTACAAGATGATATTGATGCTATCACAAACATCAAGAACACTTATCGGTTGGCTAGAAATTGGCAAGGAGATCCATGTGGCCCTGTAGCATACATGTGGGAAGGCCTAAACTGTAGTTTTCAAGGCGATAGCTCCCCAAGAATCACATCCTTGACTTTGTCTTCAAGTGGATTGACTGGGCAGATAGCATCTTCCATCTCCAAGCTCAAAATGTTACAGTACTTGGATTTATCAAACAATAGCTTAACCGGTCCAGTACCTGATTTTCTGACACAACTGCAATCACTGAAAGTCCTAAAGTTGGGGAATAACAACCTTACAGGTTCAGTTCCCAGTGGACTTGTTGACAGATCAGAAAAGGGTTCACTATCATTGAGCGTGGAGCAAAATCCAATTCTATGTGAATCTGGTTCATGCAACCAACAGACAGATGATCAGAAGAAGAAAAAGAAGAAGAAAAATAATTTAGTTATCCCACTGGTAGCATCAGTTTCTGGGATTTTGGTGTTCCTAATCGCAGTAGCAGCTATCATCTGTGGACTTAAAAAAAGAAAACCAAGAGCTGTGAACAGTCATATAGAGCCTAATACTCCATATGGGTCACATTTAGAATACAAGCAAAAACAATATACGTATAATGATCTTGCTATGATCACCAACAACTTCACTAGAATTATTGGTAAAGGTGGATTTGGAGAAGTTTATCATGGCCTTATTGATGACACTCAAGTAGCTGTCAAGGTCCTTTCTCCATCATCAGTACAAGGATATCCACAATTCGTAACAGAGGTTAAACTTCTGATGAGAGTTCATCACAAGAATCTGACTTCTCTTGTTGGCTATTGCAATGAAGAAAACAACATAGGGCTCATATATGAATATATGGCAAATGGAAACCTGGATGAGCATCTTTCAGGGAAAAATAGCCCAGCAAAGTTGTTAAGTTGGGAAGATAGACTCAGGATAGCAGTTGATGCAGCCCAAGGACTGGAATATCTGCATCATGGTTGCAAGCCACCTATAATCCACAGAGATGTGAAAAGCGCAAATATTTTACTAAATGAAAACTTTCAAGCAAAATTGGCTGATTTTGGCCTATCCAAAAGCTTCCCTGCTGATGAAGGCTCTCATTTATTCACTGTTGTGGCTGGAACTCCAGGTTACCTGGATCCTGAGTACCGCTCATCAAACAGGTTGACAGAGAAAAGTGATGTTTACAGCTTTGGAGCTGTTCTTCTGGAAATAATCACAAGTAAGCCAGCTATAGCAAAAACTCCTGAGAAGACTCACATAAAAGAGTGGGTTAGCTCTATGCTTTCTAATGGAGATATAAAAAACATTGTTGACTCAAGATTACAGGAAGATTTTGACACTAGCTCTGTGTGGAAAGCTGTTGAAATAGGAATGGCATGTTTGTCCACCAATCCTGTAAGAACCAGGCCAAGCATGAGTGATGTAGTGATAGAGCTAAAGGAGAGTTTGGCTTCCGAATTAGCTCGAAAAAGGACTGGTGGTGAGATTGAAAATGATTCAATGGACATAGATTGTGGGCTACCTGAAAATTCAAGTTACACTGAGAAAACCACAGGCATAAACTACATTTCAGATGCTAAATTCATAGATGCTGGTGTAAGCAAGAGCATATCACCAGCAGAGAAAGTCACTCTTCAACAGCAACTAGCATATGTAAGGAGCTTTCCAAGGGGAGTGAGAAACTGTTACAGAATAAATGTAACCAGGGGTACTAAGTATTTAATCAGAGCTTCTTTCTATTATGGAAACTATGATGAATTAAATGAGTTACCACAATTTGAACTCCATCTTGGAGCTAATATTTGGGACACAGTGACATTCCCCAATGCTTCACCCACCACAATCAGTGAGATTGTATACACCCCATCACTATATTATATACATGTGTGCCTAGTTAACACAGGCACTGGGACTCCATTCATTTCAGCCATAGAATTGAGACCTTTGAACAATGGTACTTATAACATTGACTCAGCTGGAACATTGGCACGCCTCCGGAGATACGATTTAGGTTCCATCTCCAACTCGGAGTACAGGTTCAAAGATGATGTTTATGACAGAATCTGGGCACCTCTTCCTTTCAAACGGTGGACACAATTAAGCACTTCACTAAGCCCTGATGATCTAGCTCAGAATGATTATAAACTACCAGCAGTTGTTATGAGCACTGCCGCGACCTCAGTGAATGCCAGCGCTCCATTTCAGTTCTATTGGGATCCAGATAATGCAAAGGAACAATACTACATCTACATGCACTTCAATGAGGTTGAAAAGCTTGCACCGAATGAAACTAGAGCATTCAATATCACCATGAATGGTGAGTATTGTTATGGTCCTGTGGTACCTCAATATCAAGTAACAAGTACCATATATAGTCCAACAGCTTTGACTGGAGCTACAAGGTACCTGTTTTCTTTAGTTCAGACAGAGAATTCTACCCTTCCACCCATCCTCAATGCCTTCGAGATTTATATAGTAAAAGATTTCTCACAATCAGAAACAGGACAAGATGATATTGATGCTATCACAAACATCAAGACCACTTATCAGTTGGCAAGAAATTGGCAAGGAGATCCATGTGGCCCTGCAGCATACATGTGGGAAGGTCTAAACTGTAGTTTTCAAGGCGATGGCCCCCCAAGAATCACATCCTTGACTTTGTCTTCAAGTGGATTGACAGGGCAGATAGCATCTTCCATCTCCAAGCTCACTATTTTACAGTACTTGGATTTATCAAACAATAGCTTAACCGGTCCAGTACCTGATTTTCTGACACAACTGCAGTCACTGAAAGTCCTGAAGTTGGGGAATAACAACCTTACAGGTTTAGTTCCCAGTGGACTTCTTGACAGATCAGAAAATGGTTCACTATCATTGAGCGTGGAGCAAAATCCAAATCTATGTGAATCTGTTTCATGCAACCAACAGACAGTTGATCAGAAAAAGAAAAATAATATAGTTATCCCCCTGGTAGCATCATTTTCTGGGATTTTGGTGTTCCTAATCGCAGTAGCAGCTATCATCTGTGGACTTAAAAAAAGAAAACCAAGAGCTGTGAACAGTCATGTAGAGCCTAATACTCCATATGCACAATTAGAATCCAAGCAAAAACAATATACATATAATGATCTTGCTATGATCACCAACAACTTCACTAGAATTCTTGGTAAAGGTGGATTTGGAAATGTTTATCATGGCCTTATTTATGACACTCAAGTAGCTGTCAAGGTCCTTTCTCCATCATCAGTACAAGGATATCCACAATTCGTAACAGAGGTTAAACTTCTGATGAGAGTTCATCACAAGAATCTGACTTCTCTTGTTGGCTATTGCAATGAAGAAAACAACATAGGGCTCATATATGAATATATGGCAAATGGAAACCTGGATGAGCATCTTTCAGGAAAAAAAAGCCCAGCAAAGTTGTTAAGTTGGGAAGACAGACTCAAGATAGCAGTTGATGCAGCCCAAGGACTGGAATATCTGCATCATGGTTGCAAGCCACCTATAATCCACAGAGATGTGAAAAGTGCAAATATTTTATTAAATGGAAACTTCCAAGCAAAATTGGCTGATTTTGGGCTATCCAAAAGCTTCCCTGCTGATGAAGGCTCTCATTTATTCACTGCTGTGGCAGGAACTCTAGGTTACCTGGATCCTGAGTACTACTCATCAAACAGGTTGACAGAGAAAAGTGATGTTTACAGCTTTGGAGTTGTTCTTCTGGAAATAATCACAAGTCAGCCAGCTATTGCAAAAACTCCTGAGAAGACTCACATAAAAGAGTGGGTTAGCTCCATGCTTTCTAATGGAGATATAAAAAACATTGTTGACTCAAGATTGCAAGAAGATTTTGACACTAGCTCTGTGTGGAAAGCTGTTGAAATAGGGATGGTATGTGTGTCTACCAGTCCTGCAAGAACCAGGCCAAGCATGAGTGATGTAGTGACAGAGCTAAAGGAGAGTTTGGCTGCCGAATTAGCTCGAAAAAGGACTGGTTGTAAGATTGAAAATGATTCAATGGAGTTGGTCCCATTGACTCTGACTACTGCACTCGGTCCCCAAGCTAGGTAG 5220 0.4034 MVLTSCPPKQTKMALFLHFLLVLLGVLMAKAEDQSGFISIDCGLPENSSYTEKTTGINYISDAKFIDTGVSKSISPAEKVTLQQQLAYVRSFPRGVRNCYRINVTRGTKYLIRASFYYGNYDELNELPQFELHLGANIWDTVTFPNDSLTTISEIVYTPSLYYIHVCLVNTGTGTPFISAIELRPLNNGTYNIDSAGTLARLRRYDLGSISNSEYRFKDDVYDRIWAPLPFKRWTQLSTSLRPDDLAQNDYKLPAVVMSTAATSVNASAPFQFYWDPDNAKEQYYIYMHFNEVEKLAPNETRAFNITLNGKYWYGPVVPQYQVINTIYNQAALTGATRYLFSLVQTENSTLPPILNAFEIYIVKDFSQSETVQDDIDAITNIKNTYRLARNWQGDPCGPVAYMWEGLNCSFQGDSSPRITSLTLSSSGLTGQIASSISKLKMLQYLDLSNNSLTGPVPDFLTQLQSLKVLKLGNNNLTGSVPSGLVDRSEKGSLSLSVEQNPILCESGSCNQQTDDQKKKKKKKNNLVIPLVASVSGILVFLIAVAAIICGLKKRKPRAVNSHIEPNTPYGSHLEYKQKQYTYNDLAMITNNFTRIIGKGGFGEVYHGLIDDTQVAVKVLSPSSVQGYPQFVTEVKLLMRVHHKNLTSLVGYCNEENNIGLIYEYMANGNLDEHLSGKNSPAKLLSWEDRLRIAVDAAQGLEYLHHGCKPPIIHRDVKSANILLNENFQAKLADFGLSKSFPADEGSHLFTVVAGTPGYLDPEYRSSNRLTEKSDVYSFGAVLLEIITSKPAIAKTPEKTHIKEWVSSMLSNGDIKNIVDSRLQEDFDTSSVWKAVEIGMACLSTNPVRTRPSMSDVVIELKESLASELARKRTGGEIENDSMDIDCGLPENSSYTEKTTGINYISDAKFIDAGVSKSISPAEKVTLQQQLAYVRSFPRGVRNCYRINVTRGTKYLIRASFYYGNYDELNELPQFELHLGANIWDTVTFPNASPTTISEIVYTPSLYYIHVCLVNTGTGTPFISAIELRPLNNGTYNIDSAGTLARLRRYDLGSISNSEYRFKDDVYDRIWAPLPFKRWTQLSTSLSPDDLAQNDYKLPAVVMSTAATSVNASAPFQFYWDPDNAKEQYYIYMHFNEVEKLAPNETRAFNITMNGEYCYGPVVPQYQVTSTIYSPTALTGATRYLFSLVQTENSTLPPILNAFEIYIVKDFSQSETGQDDIDAITNIKTTYQLARNWQGDPCGPAAYMWEGLNCSFQGDGPPRITSLTLSSSGLTGQIASSISKLTILQYLDLSNNSLTGPVPDFLTQLQSLKVLKLGNNNLTGLVPSGLLDRSENGSLSLSVEQNPNLCESVSCNQQTVDQKKKNNIVIPLVASFSGILVFLIAVAAIICGLKKRKPRAVNSHVEPNTPYAQLESKQKQYTYNDLAMITNNFTRILGKGGFGNVYHGLIYDTQVAVKVLSPSSVQGYPQFVTEVKLLMRVHHKNLTSLVGYCNEENNIGLIYEYMANGNLDEHLSGKKSPAKLLSWEDRLKIAVDAAQGLEYLHHGCKPPIIHRDVKSANILLNGNFQAKLADFGLSKSFPADEGSHLFTAVAGTLGYLDPEYYSSNRLTEKSDVYSFGVVLLEIITSQPAIAKTPEKTHIKEWVSSMLSNGDIKNIVDSRLQEDFDTSSVWKAVEIGMVCVSTSPARTRPSMSDVVTELKESLAAELARKRTGCKIENDSMELVPLTLTTALGPQAR* 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1980 1739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1552 1564 IPR008271 GO:0004672|GO:0006468
Lja3g1980 1739 PANTHER PUTATIVE-RELATED 883 1739 - -
Lja3g1980 1739 SUPERFAMILY Protein kinase-like (PK-like) 1412 1701 IPR011009 -
Lja3g1980 1739 Gene3D Ribonuclease Inhibitor 376 498 IPR032675 -
Lja3g1980 1739 Gene3D Ribonuclease Inhibitor 1222 1351 IPR032675 -
Lja3g1980 1739 Gene3D Transferase(Phosphotransferase) domain 1 1506 1722 - -
Lja3g1980 1739 Gene3D Transferase(Phosphotransferase) domain 1 666 882 - -
Lja3g1980 1739 CDD STKc_IRAK 1437 1703 - -
Lja3g1980 1739 PANTHER OS07G0107800 PROTEIN-RELATED 883 1739 - -
Lja3g1980 1739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Lja3g1980 1739 Pfam Malectin-like domain 885 1207 IPR024788 -
Lja3g1980 1739 Pfam Malectin-like domain 40 362 IPR024788 -
Lja3g1980 1739 SUPERFAMILY Protein kinase-like (PK-like) 573 859 IPR011009 -
Lja3g1980 1739 ProSitePatterns Protein kinases ATP-binding region signature. 1437 1458 IPR017441 GO:0005524
Lja3g1980 1739 ProSiteProfiles Protein kinase domain profile. 591 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1980 1739 Gene3D Phosphorylase Kinase; domain 1 1418 1505 - -
Lja3g1980 1739 Gene3D Phosphorylase Kinase; domain 1 578 665 - -
Lja3g1980 1739 SUPERFAMILY L domain-like 371 485 - -
Lja3g1980 1739 Pfam Leucine rich repeat 1262 1322 IPR001611 GO:0005515
Lja3g1980 1739 Pfam Leucine rich repeat 417 477 IPR001611 GO:0005515
Lja3g1980 1739 Pfam Protein tyrosine and serine/threonine kinase 1433 1701 IPR001245 GO:0004672|GO:0006468
Lja3g1980 1739 Pfam Protein tyrosine and serine/threonine kinase 593 859 IPR001245 GO:0004672|GO:0006468
Lja3g1980 1739 ProSiteProfiles Protein kinase domain profile. 1431 1739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1980 1739 PANTHER OS07G0107800 PROTEIN-RELATED 21 876 - -
Lja3g1980 1739 ProSitePatterns Protein kinases ATP-binding region signature. 597 618 IPR017441 GO:0005524
Lja3g1980 1739 SMART serkin_6 1431 1726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1980 1739 SMART serkin_6 591 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1980 1739 SUPERFAMILY L domain-like 1220 1332 - -
Lja3g1980 1739 PANTHER PUTATIVE-RELATED 21 876 - -
Lja3g1980 1739 SMART LRR_typ_2 464 488 IPR003591 -
Lja3g1980 1739 SMART LRR_typ_2 1309 1332 IPR003591 -
Lja3g1980 1739 SMART LRR_typ_2 1285 1308 IPR003591 -
Lja3g1980 1739 SMART LRR_typ_2 440 463 IPR003591 -
Lja3g1980 1739 CDD STKc_IRAK 597 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1980 Lja-Chr3 22779134 22799971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1980 13 871 Receptor kinase-like Gene Family AT1G51800 49.033 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Lja3g1980 Malectin_like 2.2e-114 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1980 - - minc:123206351 1686.77