Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1975 ATGGGTAGAGGTAGAGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAGGTTACTTTCTCCAAAAGGAGGAATGGTTTGCTCAAGAAAGCATGTGAGCTCTCAATTCTGTGTGATGCTGAGGTTGCTCTCATCATTTTCTCAAGCCGTGGGAAGCTCTATGAATTTGGAAGTGTTGGCACTGCCAAAACTATTGACCGATACCAACGGTGCTCTTTTAATCCTCAAGATGAGCATGTTAATTGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACTCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTGCAGAATCTTGAGAAGCAGCTTGAAGGAGCTCTGGCACAAGCTAGGCAAAGGAAGACAGAAATCATGATTGAACAAATGGAAGAGCTTCGCACAAGGGAACGTCATTTAGGAGACCTCAATAAGCAACTTAAACTCAAGCTTGAATCAGAGGGATATAATCCCAAAGTTATGGAAAACTTGTGGTCCTCTACTTCAGCTGCTGGAACCAGCAACTTTCCCTTTCATCCTGCTCAATCCAACCCAATGGATTGCCAACCAGAACCCTTTCTGCAAATAGGGTACCATCAATATGTTCAAGCTGAATCATCTAGTATTCCAAAGAACAGCATGACTTGTGAGACAAACTTCATGCACGGATGGATGCTTTGA 735 0.4367 MGRGRVELKRIENKINRQVTFSKRRNGLLKKACELSILCDAEVALIIFSSRGKLYEFGSVGTAKTIDRYQRCSFNPQDEHVNCETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTEIMIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSSTSAAGTSNFPFHPAQSNPMDCQPEPFLQIGYHQYVQAESSSIPKNSMTCETNFMHGWML* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1975 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja3g1975 244 Coils Coil 119 142 - -
Lja3g1975 244 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g1975 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 229 - -
Lja3g1975 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja3g1975 244 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Lja3g1975 244 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g1975 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja3g1975 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja3g1975 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja3g1975 244 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lja3g1975 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja3g1975 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lja3g1975 244 PANTHER MADS BOX PROTEIN 1 229 - -
Lja3g1975 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1975 Lja-Chr3 22720698 22724189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1975 1 244 MADS-box Gene Family AT2G45650 64.453 8.55e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja3g1975 K-box 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1975 K09264 - gmx:100820061 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1975 3 22720698 22724189 Lja3g1975 3 22720698 22724189 ECH
Lja4g2460 4 28768762 28776311 Lja3g1975 3 22720698 22724189 ECH