Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1974 ATGGTGAGAGGGAAGACTCAGATGAAACGCATAGAGAACGCCACAAGCAGACAAGTGACCTTCTCAAAGAGACGAAATGGGTTGCTCAAGAAGGCATTTGAGCTTTCAGTTCTGTGTGATGCTGAGGTGGCTCTTATTGTTTTCTCTCCAAGTGGGAAGCTTTATGAATTTGCCAGCTCCAGCATGCTGGAGTCAATTGAACGATACCGCAAACATACCAGGAATAACGTGCAAACAGCACATGCATCAGTTGAACAAAATATGCAGCATTTGAAGGAAGAAGCAACAATCATGATGAAGAAGATTGATATTCTTGAAGAAACAAAACGGAAACTCTCTGGAGAAGGTTTGGGATCTTGCTCCATTGAAGAACTACAACAAATAGAACAGAAGTTGGAGAGGAGCATAAGAAGTGTTCGAGCAAGAAAGTCTCAGGCTTACATGGAACAAGTTGAGCAACTAAAAGAAAAGGAAAAAGTGCTAGTGGCAGAAAACTCCAGGCTCTCTGAGAAGTATGGTATTGGTCCAGAGCCACCAACACTGGATCAGAGAGCAAAACCAAGAATGGATCTTCATAGAGAAAGCCAACCCCAGTCTTATGGTGAAAGTAGTTCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAGCGAGAATAAGGCGCATTTCTCCCAAGCTTAATTAG 693 0.4271 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPSGKLYEFASSSMLESIERYRKHTRNNVQTAHASVEQNMQHLKEEATIMMKKIDILEETKRKLSGEGLGSCSIEELQQIEQKLERSIRSVRARKSQAYMEQVEQLKEKEKVLVAENSRLSEKYGIGPEPPTLDQRAKPRMDLHRESQPQSYGESSSSSDVETELFIGLPEARIRRISPKLN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1974 230 MobiDBLite consensus disorder prediction 170 212 - -
Lja3g1974 230 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g1974 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja3g1974 230 Coils Coil 122 142 - -
Lja3g1974 230 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Lja3g1974 230 MobiDBLite consensus disorder prediction 196 211 - -
Lja3g1974 230 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g1974 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja3g1974 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja3g1974 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja3g1974 230 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Lja3g1974 230 Coils Coil 74 108 - -
Lja3g1974 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja3g1974 230 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Lja3g1974 230 PANTHER MADS-BOX PROTEIN SOC1 1 219 - -
Lja3g1974 230 Coils Coil 144 171 - -
Lja3g1974 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja3g1974 230 PANTHER MADS BOX PROTEIN 1 219 - -
Lja3g1974 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1974 Lja-Chr3 22698841 22719764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1974 1 159 MADS-box Gene Family AT2G45660 73.585 1.57e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja3g1974 K-box 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1974 - - lja:Lj0g3v0285839.1 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3168 1 38868857 38880719 Lja3g1974 3 22698841 22719764 PCT