Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1971 ATGGACAATCATGGGTCTTCACCTCCATATGGGTATCCAAACCCTTATTTCAACCCTGAAAATGGAAACACTCCTCCATATCCATATCCATATCAATATCCACCTACAGCTTCAGCTCCTGATCCATATCCACCTCTTCCTTATCCATATCCACCAAATCCTTCAAATTCATACAACTACTCCTACCCTCCATCAGACTTTCCCAATCCTCAGTCACCTCATGCTTATCCTTACCCCCTTCCAGGGTGGAGCACCAATGTAGATGGTGGGGTGGCATCTCAAACCACTGATGAGTCTTACCCTCCTCATAGTTCTGCTCACCCTCCTTTGGAACACCTTATGAGCAATGTTTGGCTGTATGATAACCAAGCAAGTGCACCTCCTCAACCATTGATACATTCCAATTCAATTCCAAACAATGAGGAGTTTCATGGCTATTCTAGTAACTCATACTCTGGTGATTCTTACCCTCCCCATAGTTCCACTCAGCCTCCGTTCGATCATCTTATGAGCAATGTTTGGCAGTCTAATAATAACCAGCCGACTGCGCCTCCTCGACCATTAACGCATTCCAATTCAGTTCCAAAACAAGAGAACAAAGAGGAGTTTGATGGCTATTCTAGACACTCCTTTTCAGGGTTGGCACCCTCTTACTCTGGCATGGAAGTGCCACTTGATGACTCAGTGCACAGTCAGAGTTTGCAGATTGTTCCAGTTCAGAACAAAGTGTCTCTGAGAATTTTGCTCCTACATGGGAATTTAGATATATGGGTTCATGGAGCCAAGAATCTTCCAAATATGGACATGTTCCACAAAACTTTAGACGATGTGTTTGGGAGGAAAGTGAGCAACAAGATTACAAGTGATCCTTATGTGTCAATTTCTATATCAAGTGCTGTGGTTGGGAGGACATTTGTTCTAAGCAACAGTGAAAACCCTGTATGGGAGCAACACTTCTATGTTCCTGTTGCACATCATTCTGCTGAAGTGCACTTTGTTGTTAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGCATAGTGGCAATTCCTGTGGAACAGATATACTTAGGGGAAAAAGTACACGGGACCTACCCTATCCTGAATAGCAATGGGAAACCTTGTAAACAAGGTGCTGTCTTGACTCTATCCATTCAGTATATTCCAATGGAAAAACTCAGCATTTATCATCAAGGAATTGGAACAGGGCCTGAGTACATCGGGGTTCCTGGCACATATTTTCCATTGAGGAAAGGTGGAACTGTTACTCTATATCAAGATGCTCATGTTCCAGATGGCTGCCTCCCTAATGTGATGCTTGACAATGGGATGTATTATGCTCATGGAAAGTGCTGGGTTGACATATTTGATGCCATAAGTCAAGCTAAGCGTTTAGTTTATATTACAGGGTGGTCAGTGTGGCACAAAGTTAGGTTGGTTAGGGATGCTGGTAACACATCAGAGTACACATTGGGGGATCTTCTGAGGTCAAGATCTCAGGAAGGAGTAAGGGTGCTTCTCCTTGTTTGGGATGATCCTACGTCAAGAAGCATTCTCGGTTATAGAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGACGATTTTTCAAGCATTCTTCTGTGCAAGTGCTGCTTTGTCCTCGCATTGCTGCAAAACGACATAGCTGGGCCAAACAACAGGAAGTTGAAACAATATACACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATTATAGCATTTGTTGGTGGACTTGATTTATGTGACGGCCGATATGATACTCCCCACCATCCCCTCTTTAGAACACTGCATACACTGCATAAGGATGACTTTCACAATCCTACTTTCATGGGTAATGTTGGTGGCTGTCCACGGGAGCCGTGGCATGACTTGCATTCTAAAATTGATGGTCCAGCTGCTTACGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAACCTAAAGGGATAAAAAAGTTGAAGAGTTCATTTGATGATGCATTACTTAGGCTAGATAGAATCACAGATATTATGAGTGTATCTGATGTTCCTAGTCTTGGTGATGATAATCCTGAAGCCTGGCATGTTCAGATATTTCGTTCAATTGATTCAAGTTCTGTTAAAGGATTTCCCAAGGAACCAAAAGATGCTTCAATGAAGAACCTAGTATGTGGGAAGAATGTGCTAATTGACATGAGCATACATACAGCATATGTAAAGGCTATTCGTGCTGCACAACGTTTCATTTATATAGAGAATCAATATTTCATTGGTTCTTCATACAATTGGAGAAACAATAGAGACCTGGGAGCTAATAATTTAATTCCAATGGAAATTGCACTGAAGATTGCTGACAAGATAAGGGCAAATGAGAGGTTTGCAGTATATATTGTTATTCCAATGTGGCCTGAGGGTGTTCCAACAGGGGCTGCTACCCAAAGGATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGATTGAAGTTGGGCTTGAAGAAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAACCGAGAGGCCATAGATATGTATGAGAATATCGCAGTGTCCGGAACTCCTCCTCCCCCCGCAAATAGTCCCCAAGCAAACACTCGAAATAGCAGACGCTTCATGATTTATGTTCACTCAAAAGGCATGATAGTTGATGATGAATATGTGATAGTGGGGTCTGCAAACATCAATCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTCATCAGACTCGGGCAAGAAAACAGTGTTATCCGCGTGGACAGATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGTACTATAGAAGACTGCTTCTTACAACCAGAGAGCCTGGAATGTGTGAAAAGGGTCAGAAAAATGGGTGAACTGAACTGGGAACAATTTTCAGCAAATGATGTAACAGAGATGACAGGGCATCTACTCAAGTACCCGGTAGAAGTCGATAGAAAGGGTAAGGTTAGACCCCTTCCTGGCCATGAAGAGTTCCCTGATGTGGGAGGAAAGATAGTAGGTTCATTTATTGCCATTCAGGAAAATCTTACCATTTGA 3171 0.4267 MDNHGSSPPYGYPNPYFNPENGNTPPYPYPYQYPPTASAPDPYPPLPYPYPPNPSNSYNYSYPPSDFPNPQSPHAYPYPLPGWSTNVDGGVASQTTDESYPPHSSAHPPLEHLMSNVWLYDNQASAPPQPLIHSNSIPNNEEFHGYSSNSYSGDSYPPHSSTQPPFDHLMSNVWQSNNNQPTAPPRPLTHSNSVPKQENKEEFDGYSRHSFSGLAPSYSGMEVPLDDSVHSQSLQIVPVQNKVSLRILLLHGNLDIWVHGAKNLPNMDMFHKTLDDVFGRKVSNKITSDPYVSISISSAVVGRTFVLSNSENPVWEQHFYVPVAHHSAEVHFVVKDSDVVGSQLIGIVAIPVEQIYLGEKVHGTYPILNSNGKPCKQGAVLTLSIQYIPMEKLSIYHQGIGTGPEYIGVPGTYFPLRKGGTVTLYQDAHVPDGCLPNVMLDNGMYYAHGKCWVDIFDAISQAKRLVYITGWSVWHKVRLVRDAGNTSEYTLGDLLRSRSQEGVRVLLLVWDDPTSRSILGYRTDGVMATHDEETRRFFKHSSVQVLLCPRIAAKRHSWAKQQEVETIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPHHPLFRTLHTLHKDDFHNPTFMGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGIKKLKSSFDDALLRLDRITDIMSVSDVPSLGDDNPEAWHVQIFRSIDSSSVKGFPKEPKDASMKNLVCGKNVLIDMSIHTAYVKAIRAAQRFIYIENQYFIGSSYNWRNNRDLGANNLIPMEIALKIADKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALIEVGLEEAFSPQDYLNFFCLGNREAIDMYENIAVSGTPPPPANSPQANTRNSRRFMIYVHSKGMIVDDEYVIVGSANINQRSMEGTRDTEIAMGAYQPHQTRARKQCYPRGQIHGYRMSLWAEHTGTIEDCFLQPESLECVKRVRKMGELNWEQFSANDVTEMTGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1971 1056 ProSiteProfiles C2 domain profile. 230 365 IPR000008 -
Lja3g1971 1056 SMART pld_4 902 929 IPR001736 GO:0003824
Lja3g1971 1056 SMART pld_4 566 601 IPR001736 GO:0003824
Lja3g1971 1056 MobiDBLite consensus disorder prediction 1 74 - -
Lja3g1971 1056 CDD C2_plant_PLD 248 388 - -
Lja3g1971 1056 Gene3D Endonuclease Chain A 714 960 - -
Lja3g1971 1056 MobiDBLite consensus disorder prediction 87 108 - -
Lja3g1971 1056 SUPERFAMILY Phospholipase D/nuclease 723 988 - -
Lja3g1971 1056 MobiDBLite consensus disorder prediction 129 205 - -
Lja3g1971 1056 SMART C2_3c 253 364 IPR000008 -
Lja3g1971 1056 MobiDBLite consensus disorder prediction 12 58 - -
Lja3g1971 1056 Pfam Phospholipase D Active site motif 903 929 IPR001736 GO:0003824
Lja3g1971 1056 Pfam Phospholipase D Active site motif 567 601 IPR001736 GO:0003824
Lja3g1971 1056 Pfam C2 domain 252 367 IPR000008 -
Lja3g1971 1056 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 566 601 IPR001736 GO:0003824
Lja3g1971 1056 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 244 390 IPR035892 -
Lja3g1971 1056 PANTHER PHOSPHOLIPASE D ALPHA 1 168 1056 - -
Lja3g1971 1056 PANTHER PHOSPHOLIPASE D 168 1056 IPR015679 -
Lja3g1971 1056 Gene3D C2 domain 233 375 IPR035892 -
Lja3g1971 1056 MobiDBLite consensus disorder prediction 87 102 - -
Lja3g1971 1056 MobiDBLite consensus disorder prediction 129 194 - -
Lja3g1971 1056 SUPERFAMILY Phospholipase D/nuclease 445 665 - -
Lja3g1971 1056 Gene3D Endonuclease Chain A 441 680 - -
Lja3g1971 1056 Pfam Phospholipase D C terminal 976 1046 IPR024632 -
Lja3g1971 1056 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 902 929 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1971 Lja-Chr3 22614231 22628947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1971 145 1056 Phospholipase D Gene Family (Wang group) AT2G42010 72.008 0.0 1401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1971 K01115 - gmx:100805294 1596.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5045 3 92615013 92618643 Lja3g1971 3 22614231 22628947 PCT