Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1970 ATGGCTATGGAAGCTTCTAGAAACATTGATCTCCGCTTGGGTGAACCCAAAGAGGAGCCGGGAACCGAAGAGGTGGCGGCGGAGATGTCCATGTCCATGTCCATGCAAGTGAACAAGGCTCAGACACCTCAGAAGAGAGCCTCCACCAAGGACCGTCACACCAAAGTGGAGGGTAGAGGCCGGAGGATCCGCATGCCCGCCACGTGCGCTGCCCGGATCTTCCAGCTCACCCGGGAGCTCGGCCACAGGTCCGACGGCGAAACCATACGCTGGCTCCTCGAACACGCCGAGCCAGCCATCATCGCCGCCACCGGCACCGGGACAGTCCCCGCCATCGCGATGTCCGTCAACGGCACGCTTAGAATACCAACCACATCCCCCTCCTCCAACAGCAAAAGCCCCGACCCGGAACCCGGAGACCCGAATGAGAAGAAAAAACGCAAGCGACCCGGTACCGGAGCTGCTGACGTCAGTTTTGGCGACGGCGGCGGTGTTTCCGTTTCGGTATCGGCAGGGCTAACAACCTCGAACCCGAACCCGACAATTCCGCAACAAACTGTGATTCCGTTACCGCAAAACGTGGTCCCCGTGTGGGCCATACCCTCAAACGCAGTCGTTCCAGCTGGAGGCGCGTTCTTCGTGGTCCCTCCCATGGCTACCGCAGCGCCATCAAATTCGAACCTACAACCTCAATTCTTCACCATAGCTCGACCTATCTCCGCTTTCGTTTCCTCCATGGTCACCCCGGTTCAGTTTCAACCAGCCTCTTCCTCGTGCTCCGCCGCTCCTCCGTCGAGGGCGACGGTCATGGCTCCGAGCACCACCACCACCACCACCACGACGCACACGCTGAGGGATTTCTCCTTGGAGATTTACGACAGGCAAGAGCTTCAGTTCATGTCGCGTTCTTCCTCGAAGCATTGA 924 0.5931 MAMEASRNIDLRLGEPKEEPGTEEVAAEMSMSMSMQVNKAQTPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHRSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLRIPTTSPSSNSKSPDPEPGDPNEKKKRKRPGTGAADVSFGDGGGVSVSVSAGLTTSNPNPTIPQQTVIPLPQNVVPVWAIPSNAVVPAGGAFFVVPPMATAAPSNSNLQPQFFTIARPISAFVSSMVTPVQFQPASSSCSAAPPSRATVMAPSTTTTTTTTHTLRDFSLEIYDRQELQFMSRSSSKH* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1970 307 MobiDBLite consensus disorder prediction 120 163 - -
Lja3g1970 307 Pfam TCP family transcription factor 48 134 IPR017887 -
Lja3g1970 307 MobiDBLite consensus disorder prediction 120 136 - -
Lja3g1970 307 MobiDBLite consensus disorder prediction 45 59 - -
Lja3g1970 307 MobiDBLite consensus disorder prediction 1 59 - -
Lja3g1970 307 MobiDBLite consensus disorder prediction 29 44 - -
Lja3g1970 307 MobiDBLite consensus disorder prediction 256 277 - -
Lja3g1970 307 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 305 IPR005333 GO:0003700
Lja3g1970 307 PANTHER TRANSCRIPTION FACTOR TCP9 14 305 - -
Lja3g1970 307 MobiDBLite consensus disorder prediction 10 24 - -
Lja3g1970 307 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
Lja3g1970 307 MobiDBLite consensus disorder prediction 137 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1970 Lja-Chr3 22609683 22611721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1970 19 306 TCP Transcription Factor Family AT2G45680 51.190 5.14e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja3g1970 TCP 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1970 - - cam:101488699 355.91