Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1963 ATGGGTTCGGGTACCAATTTGGTGACTACAATCATTGGGTTTGGATTGAGTGCAACTTTCATTGTGTTTGTGTGCACCAGAATAATTTGTGCAAGACTACGAGAGCGTTTGAGATCACGGACTATATATGAGATTGAATCAAGAAACGATATAGAGCAGGCAGCATATCATGACAATGGGCCTGGACCTGCTTTTATTGCTGCAATCCCCACTTTGAATTTCAATCAAGAGGCCTTCAGTTCCATTCAAACAACACAGTGTGTGATATGTTTGGGAGAGTACAAAGAAAAAGAATTACTCCGGATCATACCTCATTGTGGCCACAGTTTTCATCTTTCTTGCATTGACATGTGGCTGAAAAAACATTCTACATGCCCGGTTTGCCGATTGTCATTGCAGAATGCTTCTGAAGCAAAACATGTGAGACCTGTAACATTTACCATAACCCAATCTCTTAATGAGTCTAATGCTTCAGAAAGGACCACAGGAAATGAGAGACAAGTTGAGCCTAATGCTTGTAACTTGACACAATTTACTTCTGGAGAACCAGAAGCAAGACAATGA 564 0.4078 MGSGTNLVTTIIGFGLSATFIVFVCTRIICARLRERLRSRTIYEIESRNDIEQAAYHDNGPGPAFIAAIPTLNFNQEAFSSIQTTQCVICLGEYKEKELLRIIPHCGHSFHLSCIDMWLKKHSTCPVCRLSLQNASEAKHVRPVTFTITQSLNESNASERTTGNERQVEPNACNLTQFTSGEPEARQ* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1963 187 Pfam Ring finger domain 86 129 IPR001841 -
Lja3g1963 187 SMART ring_2 87 128 IPR001841 -
Lja3g1963 187 CDD RING-H2_EL5_like 86 129 - -
Lja3g1963 187 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Lja3g1963 187 SUPERFAMILY RING/U-box 86 135 - -
Lja3g1963 187 MobiDBLite consensus disorder prediction 152 187 - -
Lja3g1963 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Lja3g1963 187 PANTHER OS11G0150450 PROTEIN 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1963 Lja-Chr3 22550757 22553219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1963 76 177 C3H Transcription Factor Family AT4G10160 39.216 3.81e-21 85.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1963 3 22550757 22553219 Lja3g1963 3 22550757 22553219 ECH
Lja1g3145 1 38370848 38374485 Lja3g1963 3 22550757 22553219 PCT