Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1960 ATGGCAGGATCTGAAGCTACCAAATATGCTTCTGCTGCTACAACCACCACTGCAACAAACAACATAACCAAATCAAACAAGTCCACAATCAAGAGATTCATCGGGGTGAGGCAGAGGCCATCAGGAAGGTGGGTAGCCGAGATCAAAGACTCCTCCCAACACGTCCGCCTCTGGCTCGGAACCTACGATACACCAGAGGAAGCAGCAAGGGCGTACGACGAAGCGGCTCGCGCCCTGCGAGGGGAAAATGCGCGAACCAACTTCGTGTCGTCCGTGAACCAATTACCCACAGGGTCCTCGGGACAAACACCTGGTGGGCATGATTCTGAAGGAATCAGAAATGGACTCAGCTTCGCTTCGTTGAAAGCGAAGCTGAGCAAGAATCTTCAGAGCATCATGGCCAGAGCTAGTGATCACAACAACAAGTGCTCATCAAAGAGCAGGGTGAGTGATCACTTCACCTTTGCTAGCATATTCAACAGGAACAGAAGCTACCAGTTCCAAACCCCTGCAGGGGACATGAAACACATAGAGAAATCAGTGCAGCCTAGCATTATTGTTCCCTCTGTAGAGGATCATCATCCTCACCACCACTCCTCTAGTGTTTCTGAGTGCAGCTCTGAATGGGTCGGCTTCGGGCAACCCGGGTTGGACTCAGACGGGTCAGATATTGGTACTGTGGTTGGTGATCAAGGGTTCTTGGAGCAACTCATGGGTTGGGTTGAAAGCCCTGAATATGATGATGCTTGTGTGAGTGAAGGTTCAAGGAGCAAGAGGTTTAAGGTCTCTTCTTCTGTGCATGTGCCACCAACTTTCAGTGACTGTAGCTCCCCTTATAGTGGTTACGCCTCGCCGTATAGCGGTTACGCCTCGCCGTATAACGGTTGTGCCTCGCCGTGTAACGGTTATGGTTCTCCATATTATGGTGGGAAGTGA 936 0.5085 MAGSEATKYASAATTTTATNNITKSNKSTIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFVSSVNQLPTGSSGQTPGGHDSEGIRNGLSFASLKAKLSKNLQSIMARASDHNNKCSSKSRVSDHFTFASIFNRNRSYQFQTPAGDMKHIEKSVQPSIIVPSVEDHHPHHHSSSVSECSSEWVGFGQPGLDSDGSDIGTVVGDQGFLEQLMGWVESPEYDDACVSEGSRSKRFKVSSSVHVPPTFSDCSSPYSGYASPYSGYASPYNGCASPCNGYGSPYYGGK* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1960 311 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Lja3g1960 311 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 254 - -
Lja3g1960 311 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lja3g1960 311 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lja3g1960 311 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lja3g1960 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 254 - -
Lja3g1960 311 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lja3g1960 311 MobiDBLite consensus disorder prediction 91 113 - -
Lja3g1960 311 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Lja3g1960 311 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Lja3g1960 311 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Lja3g1960 311 MobiDBLite consensus disorder prediction 91 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1960 Lja-Chr3 22508535 22509867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1960 16 99 AP2-EREBP Transcription Factor Family AT5G19790 57.143 4.38e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g1960 AP2 9.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1960 K09286 - gmx:100799444 353.214