Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1959 ATGAAGCCTGTCTTTTGTGGAAACCTGGATTTCGATGCGCGACAATCTGATGTTGAGAGACTCTTCAGAAGATACGGGAAGGTCGAAAGAGTGGACATGAAGTCTGGATTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAATATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGCGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCTGCTGATTCAAGAAAACCTGCATCGAATATGAAACCGTCCAAGACTTTGTTTATTATAAATTTTGATCCTGTACATACCAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCCTTGGAGGATGCCACTAGAGCTTTGGAGGCAACTAACCTGAGCAAGTTTATGGATCGTGTTATCACAGTAGAGTATGCTATAAGAGATGATGATGACAGAAGGGATGGACAAAGTCCTGATAGAAGAGGTCGTGTTTCTCCTGATGGGAGATATGGTCGTGGAAGATCCCCGAGTCCATATCGTAGAGGCAGGGGTAGCCCGGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCGCAAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGATAGGTCGCGATCCTGA 750 0.4507 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAIRDDDDRRDGQSPDRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNGRYDSRSPPPRDRSRS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1959 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lja3g1959 249 Gene3D - 78 244 IPR012677 -
Lja3g1959 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 249 - -
Lja3g1959 249 MobiDBLite consensus disorder prediction 168 187 - -
Lja3g1959 249 MobiDBLite consensus disorder prediction 72 86 - -
Lja3g1959 249 MobiDBLite consensus disorder prediction 72 91 - -
Lja3g1959 249 SUPERFAMILY RNA-binding domain, RBD 4 85 IPR035979 GO:0003676
Lja3g1959 249 MobiDBLite consensus disorder prediction 168 249 - -
Lja3g1959 249 SMART rrm1_1 96 162 IPR000504 GO:0003723
Lja3g1959 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lja3g1959 249 MobiDBLite consensus disorder prediction 220 249 - -
Lja3g1959 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Lja3g1959 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Lja3g1959 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Lja3g1959 249 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS41-LIKE ISOFORM X1 4 249 - -
Lja3g1959 249 Gene3D - 2 77 IPR012677 -
Lja3g1959 249 SUPERFAMILY RNA-binding domain, RBD 84 174 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1959 Lja-Chr3 22497732 22501268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1959 4 169 Eukaryotic Initiation Factors Gene Family AT1G49760 24.044 1.69e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1959 K12893 - gmx:100797778 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1959 3 22497732 22501268 Lja3g1959 3 22497732 22501268 ECH