Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1958 ATGGTGGAAGATTGTGGAGAAGCAGTAGCTGTAGACACCCGTTCCACAGAAGAATGGTTGTTGCAGGCACAAGAGCTTGTTCCTGTTGCTCTTGCCAAGGCAAAAGAGGTTAAAGGGTTCACTGTTAGGTGGAAGATGATCATTTCAAAATTGGAACAAATCCCATCACGTTTATCAGACTTGTCTAGCCACCCCTGCTTCTCCAAGAACGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACCCTCAGAGAGGCCATTGAATTGGCTGAGTTCTGTGTGAAGGAGAAGTACGAGGGCAAGCTTCGTATGCAGAGTGATCTTGATGCATTAACAGGAAAGCTTGATTTGAATTTAAAGGATTGTGGATTGTTGATCAAAACCGGTGTGCTCGGTGAGGCTACTTTGCCATTGGCGTTAACCGTGAATGGTCCTATAGCAGAATCAGATATTACAACACATAGCAACATAAGGGAACTACTTGCACGCCTTCAGATTGGTCATTTGGAAGCAAAGCACAAAGCTTTGGATAAACTCTATGATGCTATGAGAGAAGATGAGAAGAACGTTTTGGCTGTTCTAGGTAGGAGCAATGTTGCTGCTTTAGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAAAAAACAGTCACTGTTATATGCTCTCTTGTCGAATCAGGAAGCGGCGAAAACTGGCTAGTTTCTGAAGGAGTTCTTCCACCTCTCATAAGACTAGTTGAGTCTGGCAGTACTGTTGGTAAAGAGAAGGCTGTAGTATCTCTCCAGAGGCTGTCAATGTCAGCGGATACAACCCGCGCAATCGTTGGACACGGCGGGGTTCCTCCGTTGATTGAGCTTTGTCAATCTGGTGAATCTGTGTCACAGGCTGCTGCTGCTTGTGCTTTGAAGAATATATCTTCTGTTCCTGAAGTGAGACAGGTTCTGGCTGAAGAAGGTGTTGTGAAGGTTATGATCAATCTCCTAAATTTTGGAATTTTGCTTGGTTCCAAAGAGTATGCTGCAGAGTGCTTGCAGAATCTCACTGCAAGCAATGAAAATCTGAGAAGGTCTGTGGTATCCGAAGGCGGTGTTCGGAGTCTCCTGGATTATCTTGATGGACCTCTTCCCCAAGAATGTGCTGTTGGAGCATTGAGGAACCTTGTTGGATCAGTTTCCGAGGAAGTTTTGGTTTCTCTCGGTTTGATTCCCCGTTTGGTTCATGTGCTCAAGTCTGGATCCTTAGGTGCTCAGCAAGCCGCTGTGTCTGTTATCTGCAGGATTTGCAGCTCAATGGAGATGAAGAAGATGGTTGGTGAAGCTGGATGCATCCCTCTTCTTGTGAAGGTGCTTGAAGCTAAAGCAAACGGTATTAGAGAGGTTTCTGCTCAAGCAATTGCAAGCTTGATGGTTTTGTCCCAGAACCGGAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCAAACCTGGTTCAGTTGCTTGATCCGAGTCCTCAAAACACTGCAAAAAAGTATGCGGTTTCTTGCCTTGGATCACTCTCCTCATGTAAGAAATGTAAGAAACTGATGGTTTCTTATGGAGCAATTGGGTATCTGAAGAAGCTTTCAGAGATGGAGATTCCAGGAGCTAAAAAGCTGCTTGAGCGGTTAGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAATAG 1689 0.4494 MVEDCGEAVAVDTRSTEEWLLQAQELVPVALAKAKEVKGFTVRWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAEFCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLALTVNGPIAESDITTHSNIRELLARLQIGHLEAKHKALDKLYDAMREDEKNVLAVLGRSNVAALVQLLTATSPRIREKTVTVICSLVESGSGENWLVSEGVLPPLIRLVESGSTVGKEKAVVSLQRLSMSADTTRAIVGHGGVPPLIELCQSGESVSQAAAACALKNISSVPEVRQVLAEEGVVKVMINLLNFGILLGSKEYAAECLQNLTASNENLRRSVVSEGGVRSLLDYLDGPLPQECAVGALRNLVGSVSEEVLVSLGLIPRLVHVLKSGSLGAQQAAVSVICRICSSMEMKKMVGEAGCIPLLVKVLEAKANGIREVSAQAIASLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSCKKCKKLMVSYGAIGYLKKLSEMEIPGAKKLLERLERGKLRSLFSRK* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1958 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 562 - -
Lja3g1958 562 Pfam Armadillo/beta-catenin-like repeat 272 309 IPR000225 GO:0005515
Lja3g1958 562 SUPERFAMILY ARM repeat 199 542 IPR016024 -
Lja3g1958 562 Gene3D - 154 335 IPR011989 -
Lja3g1958 562 SMART arm_5 473 515 IPR000225 GO:0005515
Lja3g1958 562 SMART arm_5 352 391 IPR000225 GO:0005515
Lja3g1958 562 SMART arm_5 310 351 IPR000225 GO:0005515
Lja3g1958 562 SMART arm_5 187 227 IPR000225 GO:0005515
Lja3g1958 562 SMART arm_5 432 472 IPR000225 GO:0005515
Lja3g1958 562 SMART arm_5 269 309 IPR000225 GO:0005515
Lja3g1958 562 SMART arm_5 392 431 IPR000225 GO:0005515
Lja3g1958 562 Gene3D - 336 550 IPR011989 -
Lja3g1958 562 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1958 Lja-Chr3 22492492 22496026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1958 397 535 U-box Gene Family AT2G23140 32.143 2.29e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1958 - - gmx:100809488 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1958 3 22492492 22496026 Lja3g1958 3 22492492 22496026 ECH
Lja1g3147 1 38392371 38394472 Lja3g1958 3 22492492 22496026 PCT