Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1951 ATGAGTTTTGGAGGTTTTCTTGACAGCAACAACTCCGGTGGTGGCGGTGGCGGTGGTAGAAACATAGCAGCTGATGTTCCTTACAGCAACGGCAACACCACCAACGATAGAATGGCCTTTGGTGCAATCTCTCAGCCACGCCTGGTGACTACTACTCCCTCTTTGGCAAAACCCATGTTCACCTCTCCTGGATTGTCTCTGGCACTTGTGAGAGATCTTCAGCAAAGCAATATAGATGGACAAGAAGATGTGAATAGAATGTGTGAGCCAAATGGTTTGAAGAGGAGCAGGGAAGAAGAGCAAAGCAGATCTGGCAGTGATAACATGGATGGTGGTGCTTCCTGTGATGAACAAGATGCTGCCGACAATCCTCCTAATAAGAAGAAGCGTTATCACCGACACACTCCTCAGCAGATTCAAGAGCTTGAAGCGTTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGATTAGAACTCAGCAGAAGGCTTTGTTTGGAAACTAGGCAGGTCAAGTTCTGGTTCCAAAATCGGAGGACCCAAATGAAGACTCAATTGGAACGCCATGAGAACACGCTGCTTAGGCAAGAGAATGATAAGCTGAGAGGTGAGAACATGTCTATTAGGGACGCTATGAGGAACCCAATTTGTTCAAACTGTGGGGGTCCAGCTATGATTGGTGAGATTTCAATTGAGGAGCAGCATCTTCGGATCGAGAATGCCCGATTGAAGGATGAGCTAGACCGGGTTTGCGCGCTCGCGGGGAAGTTCTTGGGTCGCCCCATTTCGTCATTGCCGAACTCAAGTTTGGAGCTTGGTGTTGGGGGAAACAATGGTTTTGGTGGGATGAACACAATGCCTGATTTTGGGATGGCTAACTCTTTAGCCATGGTGTCTCCTTCAATAAGACCATCACCGACTGGGGTTACTTCTGGATTTGTTGATAGATCAATTGAGAGGTCTATGATTGTTGAGCTTGCTTTGGCTGCTATGGATGAATTGATGAAGATGGCGCAGACCGGTGAGCCTCTCTGGATGAGGAATGTTGAAGTGGGGAGGGAAATTTTGAACCATGAGGAGTACATGAGGACATTCACTCCTTGCATTGGGATTAGGCCTAATGGTTTTGTCTCTGAGGCTTCTAGGGAGACTGGAATGGTCATCATAAACAGCTTAGCCCTTGTTGAAACTCTCATGGATGCAAATCGATGGGCAGAGATGTTTCCTTGCATGATTGCCAGAACCGCCACCAACGAAGTTGTATCCAGTGGGATAAATGGAACCAGAAATGGTGCACTTCAACTAATGCATGGTGAACTTCATGTTCTTTCACCTTTGGTTCCGGTTCGCGAGGTCAATTTCCTCCGATTTTGCAAGCAGCACAGAGAAGGTGTGTGGGCTGTGGTGGATCTGTCCATAGATACCATCCGAGAAGGTTCGGGCGTGCCTAGTTTTGGTAACTGCAGGAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCTAATGGTTATTCCAAGGTGACATGGGTGGAGCATGCAGAATACGACGAAAGTCAAGTCCACCAGCTGTACAGACCCTTATTGAGCTCCGGCATGGGGTTTGGAGCACAACGCTGGATCGCCACCTTACAACGCCAGTGCGAGTGCCTCGCCATCCTCATGTCCTCTGCACCACCCTCCATCAGAGACCACTCCGCACCGATTACAGCAGGGGGAAAGCGCAGCATGCTGAAGCTGGCGCAGCGCATGACCAACAACTTCTGCGCCGGGGTGTGCGCCTCCACCGTGCACAAATGGAACAAGCTGAATCCGGGCAATGTGGAGGAAAACGTGAGGGTGATGACACGGCAGAGCATCGACGATCCCGGTGAGCCACCGGGGATCGTGCTCAGCGCTGCCACGTCTGTGTGGCTCCCTGTCTCCCCTCACCGGCTCTTCAATTTCCTCCGTGACGAGAGGCTCCGGAGTGAGTGGGACATACTCTCCAACGGTGGTCCCATGCAGGAGATGGCCCACATCGCTAAGGGTCAAGACCATGGCAACTGCGTCTCTCTTCTACGAGCTAGTGCAATGAATTCGAACCAGAGTAGCATGTTGATACTACAGGAGACATGCACAGACGCGTCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATACTCCGGCCATGCACGTGGTCATGAATGGTGGCGATTCTGCTTATGTGGCGTTGTTGCCGTCTGGTTTTGCGGTTGCTCCTGATGGTGATGAGACGCGTGGGCTGGAGAATGGTGGTGGTGCTAATGGCGGTGATGATGGTGAGGCGCGTGCGGGTGGGTCCCTTCTGACGGTGGCGTTTCAGATACTCGTGAATAGTCTCCCTACGGCCAAGCTGACGGTGGAGTCAGTGGAGACCGTGAACAATCTCATCTCCTGCACGGTTCAGAAGATCAGAGCCGCGCTTTCACTGTGA 2451 0.5153 MSFGGFLDSNNSGGGGGGGRNIAADVPYSNGNTTNDRMAFGAISQPRLVTTTPSLAKPMFTSPGLSLALVRDLQQSNIDGQEDVNRMCEPNGLKRSREEEQSRSGSDNMDGGASCDEQDAADNPPNKKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRGENMSIRDAMRNPICSNCGGPAMIGEISIEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNGFGGMNTMPDFGMANSLAMVSPSIRPSPTGVTSGFVDRSIERSMIVELALAAMDELMKMAQTGEPLWMRNVEVGREILNHEEYMRTFTPCIGIRPNGFVSEASRETGMVIINSLALVETLMDANRWAEMFPCMIARTATNEVVSSGINGTRNGALQLMHGELHVLSPLVPVREVNFLRFCKQHREGVWAVVDLSIDTIREGSGVPSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWIATLQRQCECLAILMSSAPPSIRDHSAPITAGGKRSMLKLAQRMTNNFCAGVCASTVHKWNKLNPGNVEENVRVMTRQSIDDPGEPPGIVLSAATSVWLPVSPHRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCTDASGSLVVYAPVDTPAMHVVMNGGDSAYVALLPSGFAVAPDGDETRGLENGGGANGGDDGEARAGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIRAALSL* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1951 816 Gene3D - 114 201 - -
Lja3g1951 816 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Lja3g1951 816 SUPERFAMILY Homeodomain-like 108 185 IPR009057 -
Lja3g1951 816 SUPERFAMILY Bet v1-like 318 549 - -
Lja3g1951 816 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 80 815 - -
Lja3g1951 816 Coils Coil 179 199 - -
Lja3g1951 816 MobiDBLite consensus disorder prediction 78 135 - -
Lja3g1951 816 Pfam Homeodomain 128 183 IPR001356 GO:0003677
Lja3g1951 816 SUPERFAMILY Bet v1-like 579 810 - -
Lja3g1951 816 SMART START_1 325 549 IPR002913 GO:0008289
Lja3g1951 816 CDD START_ArGLABRA2_like 320 548 - -
Lja3g1951 816 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Lja3g1951 816 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 815 IPR042160 -
Lja3g1951 816 Pfam START domain 325 549 IPR002913 GO:0008289
Lja3g1951 816 MobiDBLite consensus disorder prediction 88 105 - -
Lja3g1951 816 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g1951 816 CDD homeodomain 128 185 IPR001356 GO:0003677
Lja3g1951 816 ProSiteProfiles START domain profile. 316 552 IPR002913 GO:0008289
Lja3g1951 816 SMART HOX_1 126 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1951 Lja-Chr3 22422491 22428144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1951 1 814 Homeobox Transcription Factor Family AT3G61150 62.905 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g1951 START 2.1e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1951 K09338 - gmx:100811873 1300.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1951 3 22422491 22428144 Lja3g1951 3 22422491 22428144 ECH
Lja3g1951 3 22422491 22428144 Lja1g3154 1 38580944 38588706 ECH
Lja1g3154 1 38580944 38588706 Lja3g1951 3 22422491 22428144 PCT