Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1950 ATGAACATGATGAGACGGCTCAAGAGCATTGCTTCTGGGAGGACTTCTATTTCCTCAGATCCTGGAGGAGATTCAAACAGCAAAAGAGCTAAGCTTGACCAAGAAACTGAAAAGAAGGTCAATGAGGAAACAAAAACTTTAGGTGGCAAAGATCAGGAGCAGCATGTGGATGCATCAAAAGAATCAACTGTTGGTACATCAGATGTGTCTACAGTAGCTAAAACTGAGAAGTCTGGTTTTGATGAACTTCCAAAAGAGTTACATGAAATGAAAATCAAAGATGAGAAAAGCAAAAACAACAATGAAAAGGATATAGAAGCAAGTATAGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGTCGAGACGGACAGCCGAAGCAGACAATCTCCTACATGGCTGAACGTGTGGTTGGGACTGGATCCTTTGGTGTTGTTTTTCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATAAAGAAGGTGCTGCAAGACAAGAGATACAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACCATCCTAACATTGTTAAACTAAAGCACTGTTTCTTTTCAACTACCGATAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTTTGTTCCCGAAACTGTCTACAAAGTTTCAAAGCAATATATTAGGGTGCACCAACATATGCCTATCATTTACGTGCAACTGTATATATACCAGATATGTCGTGCATTGAATTATTTACATCAAGTGATTGGCGTCTGTCATCGTGACATCAAACCTCAGAACCTATTGGTTAATCCCCAGACACATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCAAACATATCATACATATGCTCTCGATACTACCGAGCACCCGAGCTTATATTTGGAGCAACTGAATACACAACTGCTATCGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGCTCCTTCTTGGACATCCATTGTTTCCTGGAGAGAGTGGAGTTGATCAGTTAGTGGAGATCATTAAGGTCTTGGGAACACCAACCAGAGAAGAAATCAGGTGCATGAATCCACACTACAACGAATTTAAGTTCCCTCAGATTAAAGCGCACCCGTGGCACAAGGTTTTTTACAAGAGGATGCCACCTGAGGCCGTGGATCTTGTGTCAAGGCTTCTTCAATATTCACCAAATCTACGTTGCACGGCGTTGGCTGCATGTGCACACCCATTCTTCAACGATCTACGAGACCCGAATGCATCTTTGCCAAACGGGCAACCACTACCTCCTCTGTTCAATTTCACACCTGAAGAACTGGCACATGCACCTGATGAGTTGCGTCTACGTCTAATTCCTGAGCATGCAAGGAGTTGA 1404 0.4259 MNMMRRLKSIASGRTSISSDPGGDSNSKRAKLDQETEKKVNEETKTLGGKDQEQHVDASKESTVGTSDVSTVAKTEKSGFDELPKELHEMKIKDEKSKNNNEKDIEASIVSGNGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNIVKLKHCFFSTTDKDELYLNLVLEFVPETVYKVSKQYIRVHQHMPIIYVQLYIYQICRALNYLHQVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGHPLFPGESGVDQLVEIIKVLGTPTREEIRCMNPHYNEFKFPQIKAHPWHKVFYKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFNDLRDPNASLPNGQPLPPLFNFTPEELAHAPDELRLRLIPEHARS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1950 467 PANTHER SHAGGY-LIKE KINASE 6 467 - -
Lja3g1950 467 ProSitePatterns Protein kinases ATP-binding region signature. 144 168 IPR017441 GO:0005524
Lja3g1950 467 MobiDBLite consensus disorder prediction 26 58 - -
Lja3g1950 467 SMART serkin_6 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1950 467 MobiDBLite consensus disorder prediction 1 73 - -
Lja3g1950 467 MobiDBLite consensus disorder prediction 59 73 - -
Lja3g1950 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Lja3g1950 467 Gene3D Phosphorylase Kinase; domain 1 123 217 - -
Lja3g1950 467 MobiDBLite consensus disorder prediction 9 25 - -
Lja3g1950 467 Gene3D Transferase(Phosphotransferase) domain 1 218 466 - -
Lja3g1950 467 CDD STKc_GSK3 133 425 IPR039192 -
Lja3g1950 467 SUPERFAMILY Protein kinase-like (PK-like) 137 447 IPR011009 -
Lja3g1950 467 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1950 467 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 467 - -
Lja3g1950 467 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1950 Lja-Chr3 22388756 22394034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1950 142 457 MAP Kinase Gene Family AT3G59790 34.139 5.87e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja3g1950 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1950 K00924 - gmx:100811346 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1950 3 22388756 22394034 Lja3g1950 3 22388756 22394034 ECH
Lja1g3155 1 38610830 38616204 Lja3g1950 3 22388756 22394034 PCT