Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1943 ATGCCTCGTGGAACGCTTGAAGTCGTTTTGGTCAGCGCTAAGGGTCTCGATGACAGTGAATTTCTCTCCAACATAGATCCCTATGTGATTCTGGCGTACAAGGCACAGGAGCACAAGAGCACTGTGCAAGAAGGTGCTGGATCCAATCCTCAATGGAATGAGACCTTTCTTTTCACTGTTTCTGACAGTGCTTCTGAACTTACTCTAAGGATAATGGAAAAGGACAATTATAACAACGATGATTCTCTTGGCGAGGCAATAATTCCTTTAGATGCATTGTTTGAAGAGGGTAGCCTTCCAGAGACATCTTACAATGTTGTGAAGGATGAGGAATATTGTGGAGAGATTAAGGTGGCTCTCACTTTTACTGCTGAGAGAAATGGTGGTTATAATGCAGAGGAGGAGGAGAGCTATGGTGGATGGAAAGAATCGAGTGGGGACTATTAA 447 0.4385 MPRGTLEVVLVSAKGLDDSEFLSNIDPYVILAYKAQEHKSTVQEGAGSNPQWNETFLFTVSDSASELTLRIMEKDNYNNDDSLGEAIIPLDALFEEGSLPETSYNVVKDEEYCGEIKVALTFTAERNGGYNAEEEESYGGWKESSGDY* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1943 148 SMART C2_3c 5 102 IPR000008 -
Lja3g1943 148 MobiDBLite consensus disorder prediction 129 148 - -
Lja3g1943 148 Pfam C2 domain 4 102 IPR000008 -
Lja3g1943 148 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 123 IPR035892 -
Lja3g1943 148 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lja3g1943 148 PANTHER C2 DOMAIN-CONTAINING 1 148 - -
Lja3g1943 148 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 148 - -
Lja3g1943 148 Gene3D C2 domain 2 124 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1943 Lja-Chr3 22332780 22335258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1943 4 128 C2H2 Transcription Factor Family AT4G21160 27.200 2.09e-09 52.8