Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1937 ATGGAAGAAGCAGTAGCGGCAGCGACACCCTCTTCTCAGAGAAAGGCCAAGAGGAAGTCTCGAACCCTAGCTTCCGGCGACCCTGAGCTCGAGCGTCTCAACTCACTCTCATGGAACCCCACTTTCCCTCAACAAGATGATGACAACGATCCCTTTTCCCTCTTCATTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTTGAGGAGATTGATGAGGCTGATTATGGAATGGATATTCATAAACCTGGAGGAGATGACAACAAGAAGCAGGTGGTGCCTAAGCAGGGCAAAAAGTTGAAGAAACAGAAGCATGATGGGGTTGATGGTGCTCGTAGTAGCGACGATGTGCCGGAAGTGGAAACCGATGGAGAAATCGTGAAGGATGAGGAAGTGAAGACTGAGGTGAAGAAAAAGAAGAAGAAGAAGAATAAAAACAAGGCTGCGAAAGAAAACCAGAAACTCGAGCCGCAGCCGGATACTGGTTTAGATGCTGATGTGAAGGGTGATGTTGGGGAAGAGAGCATTGATGAGACTGAATTTTATGGATGGAATGAGTTGAGGCTTCATCCTCTTCTAATGAAAGCAATATACAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAAGCTTGTATTCCAGCAGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCAGAGACAGGGTCTGGTAAAACACTTGCGTTTGGTTTGCCAATTTTGCAACGCATTTTGGAGGAGAGAGAGAAGGCCGGAAAGATCGAAGAAGAAAAGGGTGAAAAAGCTGAAAAGTATGCTCCTACCGGTCTTTTGAGGAGTCTTATTATTGCGCCTACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGAGGGATTTTAGCAGAAAAACAGGAGAGACTTTTAAGATCAAAACCTGAGATTGTGGTCGGGACTCCAGGGAGGTTATGGGAACTTATGTCATCCGGAGAAAAGCATCTAGTCGAGCTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAATGGTCATTTCAAGGAGCTGCAATCTATAATTGACATGCTTCCCATGTCCAATATATCCACTGAAGATAATTCTCAAAATGCAGAAAATTGTGTTACAGTTTCTAGCTACCAAAAAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCCCTGTCTGCTGACTTTCGCAAGAAGCTAAAGCATGGTACACAAAAAAAGCAGAAGCAATCATTGACAGATGGATTGAATTCTATTGAAACTCTTTCTGAGCGAGCTGGAATGAGACCCAATGCTGCAATTATCGATCTTACCAATCCATCAATATTAGCAGCTAAGCTTGAGGAATCATTTATTGAATGCACGGAAGAAAATAAAGATGCCTATGTGTATTATATTCTGACTGTCCATGGAAAAGGCCGTACAATAGTTTTCTGTACGTCAATCGCAGCTCTGCGTCATATTTCTTCCGTATTGCGCATTCTTGGTATCAATGTGTGGACTCTTCATGCCCAAATGCAGCAACGAGCACGTTTAAAGGCCATGGACCGTTTCCGGGAAAAGGAAAATGGCATACTTGTTGCTACCGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAAAACGGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTACATAGAAGTGGTAGAACAGCAAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCACCGAGAGATACAGCAAAATTTGCTTCATTGTGCAAGTCATTTTCAAAGGATGCCTTTCGAAGGTTTCCTTCAGAGAACTCATACATGCCAGAGGTTCTGAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACGAGGAAGGGTTCCCAGGAGAAGGCTGAAAAAAACTGGTTTGACCGGAATGCCAACTCAGTGGAATTAGTTACAGAAAATTATGACAGTGAGGAGGAACAAGTTAACAAATATAAGGAAACCAAAGCTAGCTCTAGACATTTGAAGAAATTGCAGGAGGAGCTCAATATGCTGATTTCACGTCCTTTACAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTATCACACCTCTCATGCAGGGACATTTGCAACAATTAGCAAGGCAAAAACTAAGTGATCACCAGGGTTCAGGACCAGGCAAAAAGGGGAAATTGGTTGTGATTGGTCAAGATTGTGTGGAAGCACTTCAGGCACTTCGAAGTGGTGGTGAAGAGGTGCGCATGGATGTCAAAGATTTGGCAGGAAAACAGAGAAATATGCAGAATTTAAAAAGAAAAAGAAAAGACGAGAAGAGACGTTTGCGTGATGAGCGTAGAAAGCAGAAGAGAGACCAAAAGCAGGAGGACGAATAA 2457 0.431 MEEAVAAATPSSQRKAKRKSRTLASGDPELERLNSLSWNPTFPQQDDDNDPFSLFIGSNELEGGFLSLEEIDEADYGMDIHKPGGDDNKKQVVPKQGKKLKKQKHDGVDGARSSDDVPEVETDGEIVKDEEVKTEVKKKKKKKNKNKAAKENQKLEPQPDTGLDADVKGDVGEESIDETEFYGWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRILEEREKAGKIEEEKGEKAEKYAPTGLLRSLIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLRSKPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISTEDNSQNAENCVTVSSYQKKKRQTLVFSATVALSADFRKKLKHGTQKKQKQSLTDGLNSIETLSERAGMRPNAAIIDLTNPSILAAKLEESFIECTEENKDAYVYYILTVHGKGRTIVFCTSIAALRHISSVLRILGINVWTLHAQMQQRARLKAMDRFREKENGILVATDVAARGLDIPGVKTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTAKFASLCKSFSKDAFRRFPSENSYMPEVLKRLSLARQIDKITRKGSQEKAEKNWFDRNANSVELVTENYDSEEEQVNKYKETKASSRHLKKLQEELNMLISRPLQSKTFSHRYLAGAGITPLMQGHLQQLARQKLSDHQGSGPGKKGKLVVIGQDCVEALQALRSGGEEVRMDVKDLAGKQRNMQNLKRKRKDEKRRLRDERRKQKRDQKQEDE* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1937 818 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 89 738 - -
Lja3g1937 818 SMART ultradead3 201 434 IPR014001 -
Lja3g1937 818 Gene3D - 466 711 IPR027417 -
Lja3g1937 818 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 353 361 IPR000629 -
Lja3g1937 818 Coils Coil 132 153 - -
Lja3g1937 818 MobiDBLite consensus disorder prediction 1 56 - -
Lja3g1937 818 MobiDBLite consensus disorder prediction 802 818 - -
Lja3g1937 818 CDD DEADc_DDX24 193 459 - -
Lja3g1937 818 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 431 IPR014001 -
Lja3g1937 818 CDD SF2_C_DEAD 470 599 - -
Lja3g1937 818 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 182 210 IPR014014 GO:0003724
Lja3g1937 818 SMART helicmild6 509 590 IPR001650 -
Lja3g1937 818 Pfam DEAD/DEAH box helicase 206 414 IPR011545 GO:0003676|GO:0005524
Lja3g1937 818 Coils Coil 666 686 - -
Lja3g1937 818 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 469 637 IPR001650 -
Lja3g1937 818 MobiDBLite consensus disorder prediction 102 137 - -
Lja3g1937 818 PANTHER RNA HELICASE 89 738 - -
Lja3g1937 818 MobiDBLite consensus disorder prediction 778 818 - -
Lja3g1937 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 605 IPR027417 -
Lja3g1937 818 Gene3D - 129 431 IPR027417 -
Lja3g1937 818 MobiDBLite consensus disorder prediction 76 167 - -
Lja3g1937 818 Pfam Helicase conserved C-terminal domain 482 589 IPR001650 -
Lja3g1937 818 MobiDBLite consensus disorder prediction 76 94 - -
Lja3g1937 818 Coils Coil 781 818 - -
Lja3g1937 818 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1937 Lja-Chr3 22289813 22299213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1937 159 630 Eukaryotic Initiation Factors Gene Family AT5G11200 27.944 1.65e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1937 K14805 - gmx:100806018 1201.81