Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1927 ATGGCGACGGCGGAGAACAAGTCCCCCTTCATAGAACCACCAGACGAGCTCCGGTGCCGGCGGAGTGACGGCAAATCATGGCGGTGCCATCACTGGAGGATTCACGACAGCAGCTTATGCGAGGAGCATTACTTTAATGCCAGGGCCAAGTCCTTGAAATATCAAAAACCAAACAAACCCAACGCTTCTTCAGCTTCAGCGCCACCAATGCACCACGGTGAAGAGAACAACCAACGAGCTGTTCGGGCCACGCGCCGCCGGAGTCAGAAACCGAAGAGATTTCGCGAAGAAGAAGAGGAAGCGTCTCTTCCTGAGGTAAATGCTCAGGTGAAACGAAAATGTCGAAAGGAGGAAGAGGAAGACCCTGAAGGAACGGTGCTGCTACTAGACAGGAGGGTCAGGGTCAGAGAGAAGATCAAGAAATTGCTTCAATCGATTGAACGTGAAGAAGGAGAAGAAGGAACAATGACGAGAAGGAGAAGCTTTTCCTCCAGAAATGATCAGAAACTGTCTTCTTCGTCCAAGAGTGAGAAGAAATCGAGTGTTCCTCTTCCTCGGTCGTGTCATCAGTGTCAGAAGAATGATAACAGGGTTGTTCGCTGTCAAAACTGCAATGCCAAACGCTTCTGCGTCCACTGTATTCGGAGATGGTATCCGCAAATGTCTGAGGAGGCTATAGCAGAATCTTGTCCATATTGTCGAGGAAATTGTAACTGCAAGGCATGTTTATGCAGAAAAGTCCCAGCTATGAATTCAGGAAATTTAGGAATGCCTCTAAATCAAGATGAAAAGGTTCAACATTTGAAGCATTTGGTGAGAACATTGTATCCTTTTCTGGAACAATTTAATCACGAGCAGCAGTTGGAATTGGAGATGGAAGCAAAAATTAGAGGTTTATTGCTTTCAGATTTAGAAGTAAACCAAACTGTTTGTTTCGCAGATGAGCGTATATATTGCAACAATTGCAAAACCTCTATAATTGATTTTCATAGGAGCTGCCCAAATTGTTCGTATGATCTTTGCCTTACATGTTGCCGGGAAATTCGTGTTAGAAGAGTGCCTTTAGATCTGCACTCATTCAAGAAAGAATCACCAGATATTTGTCTTGGTTCAGGCTCTAAGCATGTGTGGAGAGCAATGAAAAATGGTGCCATTTCCTGTCCACCAAAGGATAATGATGGTTGTGGACATGAATATCTTGAGCTGAAATGCATACATTCACAAAATTGGATTTCAGAATTAAAGGAAAAGGTGGCAAGATTAGTCAAAGTTCATGGACTAGAAGACGTGGCTGCAGTTTCTGCACAGTGTACCTTGTGCTTCAATTCACATGATGAAAGTGACTCCATTAACAAGAAGTTGCGGAAAGCTGCCTCTCGAGAAGACTCAAAAGACAACTATTTGTATTGTCCTTCTGCTAGTGATGCTAAATGTGGGGATCTGGAACACTTCCAGGGCCATTGGATTAAGGGAGAACCAATTATTGTTAGGAATTCTCTTGAGTTAACATCTGGCTTGAGCTGGGAGCCAATGGTAATGTGGCGTGCAATGCGTGAATTGACTTACCATCATTCCAAACATTTGAACGTGAAAGCAATTGACTGCCTAGATTGGTGTGAGGTTGAAATAAACATCCATAGATTTTTCAAGGGATACTCAGAGGGTCGTACTCATCGTGACTCATGGCCTGAGGTGCTCAAACTCAAAGATTGGCCCCCGTCTAATTCATTTGAGCGGAAGTTACCACGTCATGGTATGGAGTTTATTAGTGCCTTACCTTACAAAGAGTATACACACCCTCGCTCTGGTTTTCTTAACATGGCCACAAAGCTGCCGAAGAAATCTTTGAAACCTGACTTGGGGCCAAAGACATATATAGCATATGGCTTTGCTGAAGAGCTTGGATGTGGAGACTCTGTGACCAAGCTTCATTGTGACATGTCAGATGCGGTAAATATCTTGATGCATACTGAGGAAGTGACCCTCAGGTCTGAACATCTTGCCAAAATAGAGAAGTTGAAACAACAGTATGCTGCTGAGGACAGAAGTGAACCTTTTCAAGTTTTGCAGGAAAAAAATGATTGTAAGGGGGAAAATGTTGGGGATGCGACAGGATGTATTAGTCAGCCTATGCATTCTGGAAATTTGCATAGAGGGCAAGAATTTGCCAAGGGAGGCGCTGTCTGGGATATCTTTCGGAGACAAGATGTTCCCAAGCTTGAGGAATACCTTAGAAATCATTTTAGGGAATTCAGACATTTCTATTGTTCTCGAGTGGAGAAGGTTTTTCATCCCATTCATGATCAAGTTTTTTATCTAAATTCTCATCATAAAAGGAAGCTGAAGGAAGAATTTGGAATTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCAGTCTTTATACCTGCTGGGTGCCCCCATCAAGTTAGAAACATGAAGTCATGCATAAAGGTTGCTTTAGATTTTGTCTCTCCTGAAAATATCAAGGAATGTATTCGTCTAACTGAGGAATTTCGCACTCTTCCATCAAGCCATAGAGCAAATGAAGATAAACTTGGGGTGAAGAAAATGTGTCTCCATGCATTGAGCCAGGCTGCAGACGATTTGGAGAATCTCGTGGAATGA 2628 0.4319 MATAENKSPFIEPPDELRCRRSDGKSWRCHHWRIHDSSLCEEHYFNARAKSLKYQKPNKPNASSASAPPMHHGEENNQRAVRATRRRSQKPKRFREEEEEASLPEVNAQVKRKCRKEEEEDPEGTVLLLDRRVRVREKIKKLLQSIEREEGEEGTMTRRRSFSSRNDQKLSSSSKSEKKSSVPLPRSCHQCQKNDNRVVRCQNCNAKRFCVHCIRRWYPQMSEEAIAESCPYCRGNCNCKACLCRKVPAMNSGNLGMPLNQDEKVQHLKHLVRTLYPFLEQFNHEQQLELEMEAKIRGLLLSDLEVNQTVCFADERIYCNNCKTSIIDFHRSCPNCSYDLCLTCCREIRVRRVPLDLHSFKKESPDICLGSGSKHVWRAMKNGAISCPPKDNDGCGHEYLELKCIHSQNWISELKEKVARLVKVHGLEDVAAVSAQCTLCFNSHDESDSINKKLRKAASREDSKDNYLYCPSASDAKCGDLEHFQGHWIKGEPIIVRNSLELTSGLSWEPMVMWRAMRELTYHHSKHLNVKAIDCLDWCEVEINIHRFFKGYSEGRTHRDSWPEVLKLKDWPPSNSFERKLPRHGMEFISALPYKEYTHPRSGFLNMATKLPKKSLKPDLGPKTYIAYGFAEELGCGDSVTKLHCDMSDAVNILMHTEEVTLRSEHLAKIEKLKQQYAAEDRSEPFQVLQEKNDCKGENVGDATGCISQPMHSGNLHRGQEFAKGGAVWDIFRRQDVPKLEEYLRNHFREFRHFYCSRVEKVFHPIHDQVFYLNSHHKRKLKEEFGIEPWTFIQNLGEAVFIPAGCPHQVRNMKSCIKVALDFVSPENIKECIRLTEEFRTLPSSHRANEDKLGVKKMCLHALSQAADDLENLVE* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1927 875 MobiDBLite consensus disorder prediction 90 117 - -
Lja3g1927 875 ProSiteProfiles WRC domain profile. 13 57 IPR014977 -
Lja3g1927 875 SMART cupin_9 581 840 IPR003347 -
Lja3g1927 875 MobiDBLite consensus disorder prediction 148 186 - -
Lja3g1927 875 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g1927 875 CDD cupin_RmlC-like 763 812 - -
Lja3g1927 875 MobiDBLite consensus disorder prediction 166 186 - -
Lja3g1927 875 Pfam JmjC domain, hydroxylase 726 823 IPR003347 -
Lja3g1927 875 Gene3D Cupin 466 849 - -
Lja3g1927 875 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 873 IPR045109 GO:0032454|GO:0033169
Lja3g1927 875 MobiDBLite consensus disorder prediction 148 165 - -
Lja3g1927 875 MobiDBLite consensus disorder prediction 51 117 - -
Lja3g1927 875 MobiDBLite consensus disorder prediction 11 25 - -
Lja3g1927 875 ProSiteProfiles Zinc finger RING-type profile. 188 234 IPR001841 -
Lja3g1927 875 Coils Coil 132 152 - -
Lja3g1927 875 ProSiteProfiles JmjC domain profile. 600 840 IPR003347 -
Lja3g1927 875 SUPERFAMILY Clavaminate synthase-like 479 871 - -
Lja3g1927 875 Pfam WRC 14 53 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1927 Lja-Chr3 22163606 22170236 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja3g1927 JmjC 2.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1927 K15601 - gmx:100808936 914.064