Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1918 ATGGATATAGCTTTTAGCTTACCACGGTCAAAAGTGGTATTCGATGGCTTTGATTCTTGCATTGCATTTGGCGGGAGAGGGTTTGGTTGTGCTTTTGTTGGAAACTCGAGAACGATTTTGAAAGCTCGTTCAAGAATGGTTTGTGTGGGAGAGTTTCGAGTTTCGAATGTGAAGAGGGGTTTGTCTTGTAAGGTTAATAACCTTTTTAGGGGGAATAGGGGGATTTGGTTGAAGTGTCAGGGTGATGATTCTTTAGGGTATGTCAATGGTAATGGCAGGAATGTTAATTATGTCAAAGGTAATAAGGATGAGGGCTCGGTTTCCGGTGCTGAATTGAGTGAGTCTTTGGGAGGAGAAGAAGGGAAAGGAGAGAAGAAAGAAGTTGGGGTTGAAGTAGAAGTGGAGGTACAAAGTGTGGATGAATTGAAAGAGCTGTTGCAGAAGGCCTTGAAAGAATTAGAAGCTTCTCGAGTAAATAGCTTAATGTTTGAGGAAAAGGTTAAGAAGATAGCGGAAACTGCGATTTCTTTCCAGGATGAAGCCGCGCGTGCGTGGAATGATGTTAATTCTACCCTTGATATCATCCAAGAAATTGTGAGTGAAGAATTTGATGCCAAAGAAGCTGTTCATAATGCTACGATGGCGCTTTCTTTAGCTGAGGCGAGGCTTCAAGTAGCCGCTGAATCTTTGAAGGTTGCGAAAGATGTTTTCAGTTCCACGCAAGGCTCTAACGGGGGTGATGGCGATAAAGATGAAATGCAAGAGGAGAAAGATCTCGTGGTTGCTCGGGAAGATGTCAAGGAATGTCAGACAAGTTTAGCGAATTGTGAGGCAGAACTGAGGCGCGTCCAAAGTAGAAAGGAGGAGTTGCAGAATGAAGTGAGCAACTTGCATGAAATGGCTGAAAAGGCACAGCTGAATGCAGCGAAAGCGGAGAAGGATGTCACAGACATAATGCATTTGGCTGAGCAAACTGTTGCTATGGAACTTGAGGCTGCACAGCGTGTGAATGATGCGGAGATTGCATTACTGAAAGCAGACAAGTTGGTCTCTAGTTTCAATGCTGATAATACCGCAGATACTGTACAATTACAAGATGTTGTGGCTGCTTCTGAGGAGGCGAAAGTGGTTCAACATTTTTCTGTAGATGATGCTGTTAAAAGAGACCTTGGTTCCACAAGTGATGAGGAGTCTTTGCTTGCCATACAATCACCAGAGACACTATCTAATAAAACCAGCCAAATTTTGGAAGATGTAACACAGTCTGATTTATTGAGTGATAATGAGAATGGACAGCTAAGCTTGGACTCTTCTAAAGAAGCTGAAGTCGAAGTAGAGAAGTCAACGAATGTAGTTCAAATGAAAAAGCAGGAAACACAGAAAGATTCTACTAGAGATAACTCACCAATTGCCCCCAAGACATCATTGAAGAAGTCCTCCCGATTTTTTCCTGCATCATTCTTCTCTTGTACTGCAGATGAGACTGATTACACACCAGCATCAATTTTCCATGGTCTTGTAGAGTCAGCACAGAAGCAGTTACCCAAGTTGGTTGTTGGGGTATTGTTAATTGGAGCAGGGATTTCCTTTTATGCCAATAGAGCAGAGAGGAGCACACAGTTGCTACAGCAGCCAGAAGTCATTGCAACCACTGTCGAAGAAGTTTCCTCAACTACAAAACCTCTGGTTAGACAACTTCAGAAAATCCCCAAGAGAATTCAGGAAATTATTGCGTCATTACCTAATCAAGAGGTGAATGACGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCCATATTTCAAAAAATTCCTGGAGGCAGTCCTGTTCTTGGTTACTTGGCTGCTGGTATCTTGATTGGACCTTATGGTCTCTCCATCATTCGCAATGTTCACGGGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGACTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTCTGTTGACTGCTGTAACTATTGGCGTGCTGGCTCATTATGTTTGTGGCCAAGCTGGCCCCGCTGCTATTGTCATTGGGAATGGCTTGGCACTATCGTCGACTGCTGTTGTTCTGCAGGTGTTGCAAGAGAGAGGTGAAAGCACATCACGTCATGGACGGGCTGCATTTTCAGTTTTACTTTTCCAGGATTTGGCTGTTGTTGTCCTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGATTTCAAGCCATTGCAGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCAGGAGGACGATTGCTCCTTCGACCTATATATAAACAGATTGCAGAAAATCGAAATGCAGAAATATTTTCTGCCAATACACTATTTGTTATTCTCGGGACCAGCCTTTTCACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTTGCGGAAACTGAATTTTCCTTACAGGTCGAGTCTGATATTGCTCCATACCGTGGCCTTCTATTGGGCCTGTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTCTCTCAAACTTTCCAGTCATTTCAGGGACACTGGGACTCTTGATATTTGGAAAAACTATCTTGGTTGCTTTGATTGGCAGAATATTTGGCATTTCACTAATTTCTGCCGTTAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCCTTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCTCAGTTGTCCTCTTTGCTGTTTCTTGTTGTCGGAATTTCAATGGCCCTCACGCCATGGCTAGCTGCAGGCGGCCAGTTGATTGCTTCCCGTTTTGAGCTGCATGACGTTCGAAGTTTATTACCCGTAGAAAGTGAGACAGATGACTTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCACAACTTCTTTCTGAGCGACTTATTCCTTTTGTCGCACTAGATGTGAGAAGTGAAAGGGTAACAATCGGTCGTTCCTTAGGTCTCCCTGTGTACTTCGGAGACGCTGGTAGTCGAGAGGTCCTACATAAAATTGGGGCTTCAAGAGCAAGTGCTGCAGCAGTTACTCTAGATTCCCCTGGCGCAAATTATAGAACAGTTTGGGCTTTGAGCAAGCACTTCCCAAAAGTGAAGACTTTTGTTCGTGCTCATGATGTTGACCACGGATTGAATTTAGAAAAGGCTGGAGCTACAGCTGTGGTCCCTGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCAGTGCTTGCTCAGGTTAAACTTCCTACATCTGAGATTGCAGCAACGATAAATGAATTCAGATCCCGCCATCTGTCTGAACTCACAGAGCTATCTGAATCAAGTGGAGGTTCTCTTGGATATGGATATAGCAGTATGAAGAAACCCAAATCTCAATCCCCAGATTCATTAGATGAGACCCAAGTCTCTGAGGGAACAACATGA 3582 0.4369 MDIAFSLPRSKVVFDGFDSCIAFGGRGFGCAFVGNSRTILKARSRMVCVGEFRVSNVKRGLSCKVNNLFRGNRGIWLKCQGDDSLGYVNGNGRNVNYVKGNKDEGSVSGAELSESLGGEEGKGEKKEVGVEVEVEVQSVDELKELLQKALKELEASRVNSLMFEEKVKKIAETAISFQDEAARAWNDVNSTLDIIQEIVSEEFDAKEAVHNATMALSLAEARLQVAAESLKVAKDVFSSTQGSNGGDGDKDEMQEEKDLVVAREDVKECQTSLANCEAELRRVQSRKEELQNEVSNLHEMAEKAQLNAAKAEKDVTDIMHLAEQTVAMELEAAQRVNDAEIALLKADKLVSSFNADNTADTVQLQDVVAASEEAKVVQHFSVDDAVKRDLGSTSDEESLLAIQSPETLSNKTSQILEDVTQSDLLSDNENGQLSLDSSKEAEVEVEKSTNVVQMKKQETQKDSTRDNSPIAPKTSLKKSSRFFPASFFSCTADETDYTPASIFHGLVESAQKQLPKLVVGVLLIGAGISFYANRAERSTQLLQQPEVIATTVEEVSSTTKPLVRQLQKIPKRIQEIIASLPNQEVNDEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLLTAVTIGVLAHYVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRAAFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQIAENRNAEIFSANTLFVILGTSLFTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVISGTLGLLIFGKTILVALIGRIFGISLISAVRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFELHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSERVTIGRSLGLPVYFGDAGSREVLHKIGASRASAAAVTLDSPGANYRTVWALSKHFPKVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQVKLPTSEIAATINEFRSRHLSELTELSESSGGSLGYGYSSMKKPKSQSPDSLDETQVSEGTT* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1918 1193 MobiDBLite consensus disorder prediction 105 124 - -
Lja3g1918 1193 ProSiteProfiles RCK N-terminal domain profile. 1000 1122 IPR003148 GO:0006813
Lja3g1918 1193 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1192 - -
Lja3g1918 1193 MobiDBLite consensus disorder prediction 421 437 - -
Lja3g1918 1193 Gene3D - 588 974 IPR038770 -
Lja3g1918 1193 MobiDBLite consensus disorder prediction 1154 1193 - -
Lja3g1918 1193 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 997 1138 IPR036291 -
Lja3g1918 1193 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 599 879 IPR004771 GO:0006812|GO:0008324|GO:0016021
Lja3g1918 1193 Pfam Sodium/hydrogen exchanger family 598 968 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja3g1918 1193 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1192 - -
Lja3g1918 1193 Coils Coil 132 159 - -
Lja3g1918 1193 Coils Coil 266 314 - -
Lja3g1918 1193 Gene3D - 996 1160 - -
Lja3g1918 1193 MobiDBLite consensus disorder prediction 421 475 - -
Lja3g1918 1193 MobiDBLite consensus disorder prediction 1155 1193 - -
Lja3g1918 1193 Pfam TrkA-N domain 1001 1114 IPR003148 GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1918 Lja-Chr3 22094431 22106472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1918 36 1192 Inorganic Solute Cotransporters AT4G00630 68.089 0.0 1412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1918 - - gmx:100791174 1716.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1918 3 22094431 22106472 Lja3g1918 3 22094431 22106472 ECH
Lja1g3117 1 38043348 38056293 Lja3g1918 3 22094431 22106472 PCT