Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1915 ATGGGAAGGAAACCTTGTTGTGATGACAAGATTGGGTTGAAGAGAGGTCCTTGGACTTCTGAAGAGGATGAGGCTCTTGTCAATTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCTAAGTTAGCAGGCCTTCTTCGTTGTGGTAAGAGTTGCAGGCTAAGATGGACAAACTACCTCAGACCTGATATTAAGCGTGGCCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATTGCCTCTCAGCTTCCAGGAAGAACAGACAATGAGATCAAAAATTTATGGAACACACACCTGAAGAAACGTCTCATATCCATGGGAATCGACCCACAAACCCACGAGCCAGTCGCCTCTTCAACTTACCCGATCGACAAGTCACACGCGTCAACCGCCACGCGCCACATGGCTCAGTGGGAGAGTGCAAGGCTTGAAGCTGAGGCCAGGCTCTCAAGAGAGTCATCTTTGTTCAGCAACAACACCTCCAACAAAACTAATTCTGACTATTTCCTCCGCATGTGGAACTCTGAAGTTGGACAATCTTTTCGCGCCAAGAACAAATCAGATGATGATAGCAAAGCTAGGTGCCAGAGTCCCATGTCCCTAGTTGGATCCTCAACCCCAGAAAGCAATGTGAAGGAAGATTTCGAGTGGAAATTCTCTGATTCATGTGGTGGAATTGTGGCTGATTCAAGTTCTGATGACCTTGAAGACTCTTCTGACACTGCATTGCAGCTCTTGTTGGACTTTCCTATATACAATGACATGAACTTCTTAGAATGA 825 0.4618 MGRKPCCDDKIGLKRGPWTSEEDEALVNFIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLISMGIDPQTHEPVASSTYPIDKSHASTATRHMAQWESARLEAEARLSRESSLFSNNTSNKTNSDYFLRMWNSEVGQSFRAKNKSDDDSKARCQSPMSLVGSSTPESNVKEDFEWKFSDSCGGIVADSSSDDLEDSSDTALQLLLDFPIYNDMNFLE* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1915 274 MobiDBLite consensus disorder prediction 197 223 - -
Lja3g1915 274 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lja3g1915 274 CDD SANT 17 63 IPR001005 -
Lja3g1915 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Lja3g1915 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lja3g1915 274 Gene3D - 71 118 - -
Lja3g1915 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 243 273 - -
Lja3g1915 274 CDD SANT 71 114 IPR001005 -
Lja3g1915 274 PANTHER PROTEIN ODORANT1-LIKE 1 224 - -
Lja3g1915 274 SUPERFAMILY Homeodomain-like 12 110 IPR009057 -
Lja3g1915 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Lja3g1915 274 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lja3g1915 274 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Lja3g1915 274 Gene3D - 12 69 - -
Lja3g1915 274 SMART sant 68 116 IPR001005 -
Lja3g1915 274 SMART sant 14 65 IPR001005 -
Lja3g1915 274 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Lja3g1915 274 PANTHER PROTEIN ODORANT1-LIKE 243 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1915 Lja-Chr3 22072885 22075803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1915 1 274 MYB Transcription Factor Family AT3G61250 66.078 8.88e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1915 Myb_DNA-binding 7.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1915 K09422 - gmx:100800408 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1915 3 22072885 22075803 Lja3g1915 3 22072885 22075803 ECH