Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1911 ATGAACAACAACAACAACAACAACAACGTCAACAGGGCCAACAGGTACCCACTACATCCGCCACCGCCCGGGATCGGTTATGGACGCGGTGGTGGTCCCAACCCGAACCCTAACCCTAACCAAGGGTTTCAACCTAGACTCCCTTACCAGCAACAACAGCAGCAGCAGCAACAGCACTATGTGCAGAGGAATTTGGCGCAGCAGCAACAGCAACAGCAGTGGCTGAGAAGGGCGCAATTGGGTCCTGCTGAATCCAACGGTGATGAGGTCGAGAAGACCGTGCAGTCTGAAGCTGTTGACTCCAGTTCACAAGATTGGAAGGCAAGACTGAAGATTCCACCCGCTGATACACGATATAAGACCGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTCATGGGGATTTATGAGAAGGGTTTTGAGAGACCTTCTCCCATCCAAGAAGAAAGCATACCAATTGCTCTTACCGGTAGTGACATTCTTGCTAGGGCTAAAAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCAGCATTGGAAAAAGTTGATCAGGATAATAATGTTATTCAAGTTGTTATCCTGGTCCCGACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGTTTGAAAGATGATATAATGCGTTTATATCAACCGGTTCATTTACTAGTCGGAACTCCAGGAAGAATATTAGATCTTGCTAAAAAGGGTGTTTGTGTTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTATCTCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTAGAAACCGTCAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTTTCTTCACAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACGCAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTTTATTTTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACTGAGCTTGGGTATTCATGTTTCTACATACATGCGAAGATGTTGCAAGACCATCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAATGCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATCAAGCAAATTCCGCCACACATTGATCAGGCAATTTATTGCCGGTGA 1515 0.4238 MNNNNNNNNVNRANRYPLHPPPPGIGYGRGGGPNPNPNPNQGFQPRLPYQQQQQQQQQHYVQRNLAQQQQQQQWLRRAQLGPAESNGDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKVDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLIQFLPRNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1911 504 CDD SF2_C_DEAD 342 471 - -
Lja3g1911 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Lja3g1911 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 35 504 - -
Lja3g1911 504 Pfam DEAD/DEAH box helicase 155 319 IPR011545 GO:0003676|GO:0005524
Lja3g1911 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Lja3g1911 504 Gene3D - 335 504 IPR027417 -
Lja3g1911 504 Pfam Helicase conserved C-terminal domain 356 462 IPR001650 -
Lja3g1911 504 MobiDBLite consensus disorder prediction 1 65 - -
Lja3g1911 504 SMART ultradead3 149 345 IPR014001 -
Lja3g1911 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 35 504 - -
Lja3g1911 504 MobiDBLite consensus disorder prediction 81 108 - -
Lja3g1911 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 484 IPR027417 -
Lja3g1911 504 SMART helicmild6 381 462 IPR001650 -
Lja3g1911 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Lja3g1911 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Lja3g1911 504 CDD DEADc_DDX6 132 332 - -
Lja3g1911 504 Gene3D - 87 334 IPR027417 -
Lja3g1911 504 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1911 Lja-Chr3 22025622 22040059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1911 130 501 Eukaryotic Initiation Factors Gene Family AT3G19760 38.770 5.04e-95 292