Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1903 ATGGATCGAGGGGACCAAATGGCGTCTTACTATATGCAGAGAGGAATGCCTGGTGGTGCTGGAAACCAACCTCAACCAGAATTGCATAATTCATCGAGTATTCGTCCACTGTCGAATAATCCTAATCTATCATTTCAATCAAACATCGGAGGTGGTGCCATTGGATCCACATTGCCATTAGAATCTTCAGGAATTTCGTCTCAATGTGTCAATGTGGGGGCTCCTTCTGGGGAACCTGCCAAAAGGAAGAGAGGAAGACCTAGAAAATATGGGTCTGATGGAACTGTGTCATTGGCATTGACTCCAACACCAGCTACTCATCCTGGAACCCTTACACAAGGCCAGAAACGGGGTAGAGGGCGCCCCCCAGGGTCCGGGAAAAAACAGCAATTGGCTTCTCTAGGTGTGGTGACGTCTGGTTCAGCCGGGATGGGTTTCACTCCTCATGTCATCACCATTGCAATTGGAGAAGACATCGCAACAAAAATTATGGCATTTTCTCAGCAGGGACCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGTCAGCCTTCAACTTCAGGAGGCAGTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTGCTTGCTGATGGTGGTGGTGGCTCCCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTTATTGCAGCAAGTCTGGTTCAGGTGATAGTTGGGAGCTTCATTTGGGGTGGATCAAAGACGAAGAACAAGAAAAATGAAGATTCAGAAGGTGCAGAAGTTTCTATGGAGTCAGATCATCAGGCAGTTCATAATCCAGTCGCAGTGAATAGCATTTCCCCAAACCAGAATCTGACTGCAATCTCATCTCCCAGCCCTTGGCCTGCATCGCGTACATTGGATATGCGTAATTCCCATATCGACATTGATTTAATGCGCGGGTGA 1008 0.4772 MDRGDQMASYYMQRGMPGGAGNQPQPELHNSSSIRPLSNNPNLSFQSNIGGGAIGSTLPLESSGISSQCVNVGAPSGEPAKRKRGRPRKYGSDGTVSLALTPTPATHPGTLTQGQKRGRGRPPGSGKKQQLASLGVVTSGSAGMGFTPHVITIAIGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLADGGGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASLVQVIVGSFIWGGSKTKNKKNEDSEGAEVSMESDHQAVHNPVAVNSISPNQNLTAISSPSPWPASRTLDMRNSHIDIDLMRG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1903 335 MobiDBLite consensus disorder prediction 269 285 - -
Lja3g1903 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 265 - -
Lja3g1903 335 CDD DUF296 147 262 IPR005175 -
Lja3g1903 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 305 IPR039605 GO:0003680
Lja3g1903 335 ProSiteProfiles PPC domain profile profile. 142 285 IPR005175 -
Lja3g1903 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 262 IPR005175 -
Lja3g1903 335 MobiDBLite consensus disorder prediction 96 113 - -
Lja3g1903 335 MobiDBLite consensus disorder prediction 69 131 - -
Lja3g1903 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 305 - -
Lja3g1903 335 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Lja3g1903 335 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Lja3g1903 335 MobiDBLite consensus disorder prediction 1 44 - -
Lja3g1903 335 MobiDBLite consensus disorder prediction 24 44 - -
Lja3g1903 335 Gene3D - 148 290 - -
Lja3g1903 335 MobiDBLite consensus disorder prediction 269 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1903 Lja-Chr3 21870140 21874614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1903 1 335 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.162 2.52e-79 244