Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1902 ATGGATCGAGGGGACCAAATGGCGTCATACTATATGCAGAGAGGAATACCTGGTGCTGCTGGGAACCAACCTGAATTGCTTAATTCATCGAGTATTCAGCCACTGCCTAACCCTAATCCACAATTTCAATCAAACATTGGAGGTGGTACCATTGGATCCACATTGCCATTAGAATCTTCTGGAATTTCATCTCAATGTGTCAATGTGGGGGCTCCTTCTGGGGCACCTGTCAAAAGGAAGAGAGGGAGACCTAGAAAATATGGGTCTGGTCAAGGAACTGTGTCATTGGCATTGACTCCAACACCAGCTACTCATCCTGGAACCTTTACACAAGGCCAGAAAAGGGGTAGAGGGCGCCCCCCTGGGTCTGGGAAGAAACAGCAATTGGCTTCTCTAGGTGAATTGGTGTCTGGTTCAGCCGGGATGGGTTTCACTCCTCATGTCATCACTGTAGCAATTGGAGAAGACATTGCAACAAAGATTATGGCATTTTCTCAGCAGGGACCTAGGGCTATATGTATATTGTCAGCTAATGGTGCTGTCTCTACTGCGACACTCGTTCAGCCTTCTTCTTCAGGGGGCAGTGTCACATATAAGGGGCTTTTTGAGATTTTGTGCCTGTCAGGCTCTTACTTTCTTGCTGATGGTGGTGGCTCCCGCAGTCAAACTGGTGGATTAAATATTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGCGGAGGAGTTGGTGGAGTGCTTATTGCAGCAAGTCTGATTCAGGTGATAGTTGGGAGCTTCATGTGGGGTGGATCAAAGACAAAGAACAAAAACAAACAAGATTCAGAAAATGCAGAAGTTGCTATGGAGTCAGATCATCATGCAGTTCACAATCCAGTTGCAGTGAATAGCATTTCTTCAAATCAAAATCTTACTCCAATCTCATCTCTAAGTTCTTGGCCGGCATCGCGTCAATTGGATATGCGTAATTCCCATATTGGCATTGATTTAATGCGTGGGTGA 999 0.4615 MDRGDQMASYYMQRGIPGAAGNQPELLNSSSIQPLPNPNPQFQSNIGGGTIGSTLPLESSGISSQCVNVGAPSGAPVKRKRGRPRKYGSGQGTVSLALTPTPATHPGTFTQGQKRGRGRPPGSGKKQQLASLGELVSGSAGMGFTPHVITVAIGEDIATKIMAFSQQGPRAICILSANGAVSTATLVQPSSSGGSVTYKGLFEILCLSGSYFLADGGGSRSQTGGLNISLASPDGRVIGGGVGGVLIAASLIQVIVGSFMWGGSKTKNKNKQDSENAEVAMESDHHAVHNPVAVNSISSNQNLTPISSLSSWPASRQLDMRNSHIGIDLMRG* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1902 332 ProSiteProfiles PPC domain profile profile. 140 281 IPR005175 -
Lja3g1902 332 MobiDBLite consensus disorder prediction 15 130 - -
Lja3g1902 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 259 IPR005175 -
Lja3g1902 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 302 - -
Lja3g1902 332 CDD DUF296 145 259 IPR005175 -
Lja3g1902 332 MobiDBLite consensus disorder prediction 92 111 - -
Lja3g1902 332 Gene3D - 146 286 - -
Lja3g1902 332 MobiDBLite consensus disorder prediction 23 70 - -
Lja3g1902 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 302 IPR039605 GO:0003680
Lja3g1902 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 261 - -
Lja3g1902 332 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Lja3g1902 332 SMART AT_hook_2 78 90 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1902 Lja-Chr3 21826886 21830980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1902 77 332 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 55.556 1.34e-79 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1902 - - lja:Lj0g3v0302789.1 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1902 3 21826886 21830980 Lja3g1902 3 21826886 21830980 ECH