Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1899 ATGGGGATTCAGTGCTCCAGACTTGTCCCATGTTGTGTGAATTCACAAGTCAAGGCATCTGCTCTTGAAACTCCAGATGCTGAAAATGAGGATAGAAGTGAGGCCAGTAACTGGCCTACATTCCGTGAATTTACACTTGAGCAACTTAAGAATGCAACATCTGGTTTTGCTGTCGAGAATATTGTATCTGAACATGGAGAAAAGGCTCCAAATGTTGTTTATAGAGGGAAGCTGGAGAGTCAAATGAGGATTGCTGTTAAGCGATTTAATAGAAATGCTTGGCCTGATTCTCGGCAGTTTTTGGAGGAAGCAAGATCAGTTGGTCAGCTTCGTAACCAAAGATTGGTGAATTTGCTTGGTTGTTGTTGTGAAGGAGAGGAGAGGTTGCTTGTGGCAGAGTATATGCCTAATGAAACACTTGCAAAACATCTTTTCCATTGGGAAACACAACCTATGAAATGGGCAATGCGACTAAGGGTCGTCCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGGATGGTAATCCTAGGCTTTCAAGTTTTGGCCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCCCCAAGTCATGCCCTAGATTTGATTAGGGACCGAAATCTTCAGATGCTGACAGATTCTTGTTTGGAAGGACAATTTTCTGATGATGATGGAACTGAGCTGGTACGCTTGGCATCTCGATGTTTGCAGTATGAACCTAGAGAACGGCCTAATTCCAAATCATTGGTGGCTGCATTGGCTCCTCTTCAGAAGGAAACAGAGGTTCCTTCACATGTATTGATGGGCATCCCACATAGTGCCACTTTTGCTGCATTATCTCCACTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAATACTGGCTATAAAGATGATGAAGGAGTAGCTAATGAGTTATCATTCCAGATGTGGACTGATCAAATGCAGGACACATTAAATTGTAAGAAAAGGGGGGATGCTGCTTTCCGACAGAAAGATTTCAGACAAGCTATTGAGTGCTACACACAGTTCATTGATGTTGGAACAATGGTTTCTCCAACAGTCTACGCACGACGCAGTTTGTGTTATCTCATAAGTGACATGCCTCAGGAAGCGCTGAACGACGCAATGCAAGCACAAGTCGTTTCCCCGGTATGGCACATTGCATCTTATCTTCAATCGGTTGCCCTTGCAGCAGTTGGGATGGAGAATGAAGCTCATGTAGCACTTAAAGAAGGCACTACACTGGAAACGAGGCGTAACTCAACTGCTAAAAGAAAGTGA 1476 0.4336 MGIQCSRLVPCCVNSQVKASALETPDAENEDRSEASNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYRGKLESQMRIAVKRFNRNAWPDSRQFLEEARSVGQLRNQRLVNLLGCCCEGEERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNSKSLVAALAPLQKETEVPSHVLMGIPHSATFAALSPLGEACSRKDLTAIHEVLENTGYKDDEGVANELSFQMWTDQMQDTLNCKKRGDAAFRQKDFRQAIECYTQFIDVGTMVSPTVYARRSLCYLISDMPQEALNDAMQAQVVSPVWHIASYLQSVALAAVGMENEAHVALKEGTTLETRRNSTAKRK* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1899 491 SUPERFAMILY TPR-like 381 480 IPR011990 GO:0005515
Lja3g1899 491 PANTHER LRR RECEPTOR-LIKE KINASE 1 490 - -
Lja3g1899 491 SUPERFAMILY Protein kinase-like (PK-like) 32 319 IPR011009 -
Lja3g1899 491 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Lja3g1899 491 Gene3D Tetratricopeptide repeat domain 380 491 IPR011990 GO:0005515
Lja3g1899 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Lja3g1899 491 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Lja3g1899 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 490 IPR045845 GO:0004672|GO:0009742
Lja3g1899 491 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1899 Lja-Chr3 21749853 21756170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1899 10 313 Glycoside Hydrolase AT3G07070 32.831 9.93e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lja3g1899 PK_Tyr_Ser-Thr 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1899 K14500 - gmx:100781311 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1899 3 21749853 21756170 Lja3g1899 3 21749853 21756170 ECH