Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1882 ATGGCTGTGGTAAGTCATGTGCTAGCAACTCCACAAGGGATCATTTCCGGGAACTCACTTGGTGATTTTAGGCTTCCTAGAATGTTGACCACAAGGAGAGAAATTATAGAAGAGCCTAATCAAAGTGTTGTTAATGACACAATCTATGTTGCTGTGGCAAAAGATGTGAAAGATAGCAGACTAAATCTTATATGGGCAATACAGAACTCTGGAGGAAAGAAAATTTGCATCCTTCACGTTCACGTGCCATCACATATGATCCCCATCAGTGACATGGGTGCTAAATTTCCAGCAAGTGCATTGAAAGAGCAGGAAGTTGAAGCTTACCGCGAAGTTGAAAGGCAAGACATGCATAAAACTCTGGATGCTTATCTTCTTATCTGTCAAAGGATGGGGGTGTGGGCAGAGAAACTACACATTGAAATGAATTGTATTGAAAAAGGAATTGTAGAACTCATCTCCACTTATAACATACAAAAGCTTGTAATGGGAGCAGCTTCAGACAAGTACCATTCAAGGAGAATGACAGACCTCAGATCTAAGAAAGCTATCTATGTAAAGGAACAAGCTCCAGCTTCTTGTCGTATACAATTCATTTGCAAAGGATACCTTATCTACACAAGGGATCGCAGTTTGAGTGGAGGAAATGTAGGGGTCACATCTCCTTTGGTGCAGCAAATGCCAAACACTGAAGTTGGGCTTTTAACTCACTTTAGATCTCATTCTGTTTCCTTTGGGAAAAGTGTGAAAGATCAAGTGTTATTTCGCAGAGCAAGCTCCACCAATGATGGACATGGAAAGAGCATTGCATCTGTTTTCTCACCGTGCTCTCAGAGTGGCTCAGTAATGAGCCCAAATTTGATTAATGATGGAAGTGAAAATGTATTGGAATTGAGTTTGAGGGGACTTTCTAGTATTAAAGAGGATCTCCATCATTCATCGCCTCCTAGTGTGCTGGATGGTGGAATGAATGATACTCTTTATGATCAACTAGAGCAGGCAATGTCTGAGGCTGAGAATGCTAGGTGTGATGTGTATCAAGAAGCTCTTAGGCGTGGGAAAGCTGAAAAATTTGCCATTGATGCTATACGCAGGACTAAAGCCACTGAAATCATGTATAAAGAAGAGCTGAAACAAAGGAAAGAGGCAGAGGAAGAACTAGACAATGCAAAAGCAGAAATTGATAACATGATTAGCCAAAGGGACAAAGTTAATAAGGAGCTCCAACTTGCTCGAGATCAGAAGACATCACTACGGAATCAAATTACATCAACTGAACTTACCATGAAGGATTTGGAGCAGAAGATTATGTCTGCTGTGGATCTGTTACAAAACTGCAAGAATGAACGAGATGATTTGCAAATTCAGCGCGATAATGCTTTGAGAGAGGCTGAAAATTTTAAAAAAGAACAAGGAGAGGCCTCAAGCACACATCATGTGCTTCCACTCTTCTCTGAATTCTCTTTCTCAGAGATTGTAGAAGCAACAGGTAACTTCAATCCATCCATGAAGATTGGTGAAGGTGGATATGGAAGTATATTCAGAGGTATCCTGCGTCACACTGAGGTGGCTATCAAAATGTTGAACCCCAACAGCACACAAGGACCCTCAGAGTTCCAACAGGAGGTTGAAGTATTGAGCAAGTTAAGGCATCCAAATCTTATCACACTTATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTATGAGTATCTCCCCAATGGAAGCCTTGAAGATCGTCTCTGTTGCAAGGATAACACGCATGCATTATCGTGGCAAACTCGGATAAACATTGCGACAGAACTATGTTCTGCTCTCATTTTTCTCCACTCTAGTAAACCTCACAGCATAGTGCATGCTGACTTAAAACCCTCCAACATTCTCCTTGATGCAAACCTTGTTAGTAAGCTCAGCGACTTCGGGATCTGCCGCGTACTATCCTGTCAAGAGGATTCTAGTAACAATAGCACAGAGTTTTGGAGAACTATGCCAAAAGGAACTTTTGTGTACATGGATCCTGAATTCCTCAATTCAGGGGAACTTACTGAAAAATCAGATGTTTATTCATTTGGTATCATACTTTTGAGGTTGATTACTGGGAGACCAGCCTTGGGAATAATAAAAGAAGTGCAATGTGCTTTGCATGCTGGCAAGTTGAAATCCCTCTTGGATCCTTTGTCTGGAGACTTGCCATTTGAGCAGGCTGAGAAGTTGGCTTGCTTGGCTTTGAGGTGTTGTGATATGAACAGAAATAGCAGGCCAAACCTTCATTCAGATGTATGGAGGACACTGGAGCTAATGAGGGCATCTTGTGGAGGCACACACACCTTTGAACTAAGTTCTCAAGGGCACTGCCAGCCTCCTCCATATTTTATTTGTCCTATCTTACAGGAAGTCATGCGAGATCCACATGTGGCTGCAGATGGTTTCACTTATGAAGCTGAAGCTATACGAGGATGGCTGGAAAGCGGTCATGACACTTCACCAAGGACAAGTTCTAAGCTTACACATTACAATCTTGTTTCCAACCATGCTCTCCGCTATGCAATCCAGGACTGGCTTCAAAGTCATTGA 2574 0.4219 MAVVSHVLATPQGIISGNSLGDFRLPRMLTTRREIIEEPNQSVVNDTIYVAVAKDVKDSRLNLIWAIQNSGGKKICILHVHVPSHMIPISDMGAKFPASALKEQEVEAYREVERQDMHKTLDAYLLICQRMGVWAEKLHIEMNCIEKGIVELISTYNIQKLVMGAASDKYHSRRMTDLRSKKAIYVKEQAPASCRIQFICKGYLIYTRDRSLSGGNVGVTSPLVQQMPNTEVGLLTHFRSHSVSFGKSVKDQVLFRRASSTNDGHGKSIASVFSPCSQSGSVMSPNLINDGSENVLELSLRGLSSIKEDLHHSSPPSVLDGGMNDTLYDQLEQAMSEAENARCDVYQEALRRGKAEKFAIDAIRRTKATEIMYKEELKQRKEAEEELDNAKAEIDNMISQRDKVNKELQLARDQKTSLRNQITSTELTMKDLEQKIMSAVDLLQNCKNERDDLQIQRDNALREAENFKKEQGEASSTHHVLPLFSEFSFSEIVEATGNFNPSMKIGEGGYGSIFRGILRHTEVAIKMLNPNSTQGPSEFQQEVEVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLCCKDNTHALSWQTRINIATELCSALIFLHSSKPHSIVHADLKPSNILLDANLVSKLSDFGICRVLSCQEDSSNNSTEFWRTMPKGTFVYMDPEFLNSGELTEKSDVYSFGIILLRLITGRPALGIIKEVQCALHAGKLKSLLDPLSGDLPFEQAEKLACLALRCCDMNRNSRPNLHSDVWRTLELMRASCGGTHTFELSSQGHCQPPPYFICPILQEVMRDPHVAADGFTYEAEAIRGWLESGHDTSPRTSSKLTHYNLVSNHALRYAIQDWLQSH* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1882 857 CDD RING-Ubox_WDSUB1_like 791 831 - -
Lja3g1882 857 ProSiteProfiles U-box domain profile. 786 857 IPR003613 GO:0004842|GO:0016567
Lja3g1882 857 Gene3D Transferase(Phosphotransferase) domain 1 572 776 - -
Lja3g1882 857 PANTHER U-BOX KINASE FAMILY PROTEIN 14 856 - -
Lja3g1882 857 Coils Coil 366 470 - -
Lja3g1882 857 Gene3D Phosphorylase Kinase; domain 1 484 571 - -
Lja3g1882 857 Pfam Protein kinase domain 502 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1882 857 Pfam U-box domain 788 857 IPR003613 GO:0004842|GO:0016567
Lja3g1882 857 PANTHER OS02G0152300 PROTEIN 14 856 - -
Lja3g1882 857 SMART serkin_6 499 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1882 857 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 59 167 - -
Lja3g1882 857 SUPERFAMILY Protein kinase-like (PK-like) 475 757 IPR011009 -
Lja3g1882 857 Coils Coil 324 344 - -
Lja3g1882 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 857 IPR013083 -
Lja3g1882 857 CDD STK_N 47 202 - -
Lja3g1882 857 ProSiteProfiles Protein kinase domain profile. 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1882 857 SUPERFAMILY RING/U-box 782 856 - -
Lja3g1882 857 ProSitePatterns Protein kinases ATP-binding region signature. 505 526 IPR017441 GO:0005524
Lja3g1882 857 SMART Ubox_2 790 853 IPR003613 GO:0004842|GO:0016567
Lja3g1882 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1882 Lja-Chr3 21570730 21582174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1882 35 857 U-box Gene Family AT2G45910 53.762 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja3g1882 Pkinase 9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1882 - - gmx:100780079 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1882 3 21570730 21582174 Lja3g1882 3 21570730 21582174 ECH
Lja3g1882 3 21570730 21582174 Lja1g3086 1 37478006 37484066 ECH
Lja1g3086 1 37478006 37484066 Lja3g1882 3 21570730 21582174 PCT