Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1873 ATGTCGGAACCAACAATGTCACTCTTTCTCTTCTTCTTCTTCTTCTTCTTCACTCTCATTGCTTCTTCCTCTCAAACCAAATCCACCACATTACTCACCGGAAACACCACCATTCACAGCGACAATCAAACCTTCGAACTCGGCTTCTTCAACTTCGACAATAACCAACCTCGCTGGTACCTCGCAATCCGCTTCACTTCCCTCCCCGCCCCCAACATCATCTGGGTCGCCAACCGCCGCAAACCCGCCACCACTCTCTCCGGCGCCACCCTCCAACTCACCGAAACCGGTCAATTGATCCTCACCCATTCACCATCACCATCACCCACTTCAACCCTCTGGCAAACCAACAACATACAGGGTCAAGGTCAGGGAGTGAAGCTCAAGCTTCTCGAAAATGGCAACCTCGTCCTCCTCTCCACAAACGGCGCCGTTTCATGGCAGAGCTTCGATGAACCCACCGACACCTGGCTCCCCGGCATGAACCTCACCCGCTTCAAGACACTCACCTCATGGCGCACGTTAGCGGACCCATCTCCGGGGCTTTACTCTCTGCGGCTGAGGCCGCCGGACTACGGCGAGTTCGAGATGGTGTTCAACGGCAGCGTTTCGTACTGGTCCACTGGGAATTGGACTAATGGGTCCTTCCTCAACGTGCCGGAGATGACAGTGCCTTACATCTACCGGTTCAATTTCGAGGACCCGTTTTCTCCGACGGCGTCGTTTGGATTCTCCGAGAACGCTTTGGACAATGGGCTCAGACCCCCTACCATGTTCCGTGTGGAGCCTTACGGCCAGGTCCGGCAGTACACGTGGTTTGCTCAGGCTGGGTCGTGGAACATGTTTTGGTCTAGGCCTGAAGAGGTTTGTCAGGTTCGGGGACTCTGCGGGAGCTTCGGCGTCTGCACCGGCGAGATTTCGAGGTTCTGTAAGTGTGTCGCGGGTTTTGAGCCTGTGGATGGTGATGGGTGGGGTTCCGGTGACTATTCTGGGGGCTGCCGGCGTGAGGGAACGTGTGGTGAGAATGATGGGTTTGAAGATCTGGGTGCTGTGAGGTTCGGTGGTGCTAATGTGAGTTCTTTTAAGGTGAAATCTAGAGGCTTGTGTGAGCGTGAGTGTTTAGCTTCTTGTGGTTGTGTTGGTTTGTCCTTTGATGAAAGGGGTGGTTTGTGCAAGAATTTTTATGGGTCTCTTGTGGATTTCCAAAATTCGACGACTGCTTTTGCGGGTGGTGGTGATGTGTTGTATGTTAGGGTTCCCAGAGAGGGATCTGTGAGGAAGGGGTTGAGTCATAAGGTTTTGGCTGTTGTTGTTGTCGGGGCAGTTGCGGTTTTGAGTGTGGTGGTAGTGACATTGTTGGTGATGTGGAGGAGGTTGAAGAAGAAGGGGATGGAGGAAGATGAGTTTGTTCCTATGTTGAATTTGAAGGTGTTTTCTTACAAGGAGCTTCAATTGGCTACTCGGGGGTTTTCGGAGAAGGTTGGGCATGGCGGGTTTGGGACGGTGTTTCAAGGGGAGCTGAGTGATTCCTCTCTAGTTGCAGTGAAGCGTTTGGAGAGGCCAGGGGGCGGGGAGAAAGAGTTCAGGGCAGAGGTGTCCACTATTGGGAACATTCAGCATGTTAATCTTGTGAGGCTCAGAGGGTTTTGCTCTGAGAATTCTCACAGGCTTTTGGTCTATGAGTACATGCATAATGGTGCCCTGAGTGCTTATCTGCGGAAAGATGGGCCATGTTTGAGCTGGGATGTTAGGTTCCAGGTAGCAATTGGAACGGCTAAAGGCATAGCTTATTTACATGAGGAATGTAGATGTTGCATCCTGCACTGTGATATCAAGCCTGAAAACATCCTTTTGGACAGTGATTTCACTGCCAAAGTTTCTGATTTTGGGTTGGCAAAGCTCATAGGCAGGGACTTCAGCAGGGTTTTGGCAACCATGAGGGGTACATGGGGATATGTAGCTCCGGAGTGGATTTCGGGTGTGGCAATCACCACCAAAGCTGATGTTTACAGCTATGGCATGACATTGCTAGAACTAATCAGCGGTCGCCGGAATGTAGAGACACCACCATCTGCTGAGAAGTGGTTCTTTCCTCCGTGGGCAGCACAGCAGATAATCGAGGGTAATGTGGCTGCTGTGGTTGATAAGAAGCTTGGAAGTGTATATAGCATTGACGAGGCTGGAAGGATTGCTTTGGTGGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCTACTATGAATATCGTGGTGAAAATGTTAGAGGGATTAGTGGAGGTGACCGTTCCTCCACCACCTAAGATGCTACAAGCGTTGGTTACAGGGGAATCCTTTCATGGGGTAAAGGGTGATTCTGAGAATGAAGTATCCTCTGTTGGAAGCTTATCCGGTGGCAACTTGGAAGTGTCAACTGCTGATTCAGAATCATGTATAGGGGATGCTTCTTCCCCTCTGGATTTCAACGTCAACGTTCGATGA 2481 0.5099 MSEPTMSLFLFFFFFFFTLIASSSQTKSTTLLTGNTTIHSDNQTFELGFFNFDNNQPRWYLAIRFTSLPAPNIIWVANRRKPATTLSGATLQLTETGQLILTHSPSPSPTSTLWQTNNIQGQGQGVKLKLLENGNLVLLSTNGAVSWQSFDEPTDTWLPGMNLTRFKTLTSWRTLADPSPGLYSLRLRPPDYGEFEMVFNGSVSYWSTGNWTNGSFLNVPEMTVPYIYRFNFEDPFSPTASFGFSENALDNGLRPPTMFRVEPYGQVRQYTWFAQAGSWNMFWSRPEEVCQVRGLCGSFGVCTGEISRFCKCVAGFEPVDGDGWGSGDYSGGCRREGTCGENDGFEDLGAVRFGGANVSSFKVKSRGLCERECLASCGCVGLSFDERGGLCKNFYGSLVDFQNSTTAFAGGGDVLYVRVPREGSVRKGLSHKVLAVVVVGAVAVLSVVVVTLLVMWRRLKKKGMEEDEFVPMLNLKVFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSSLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMHNGALSAYLRKDGPCLSWDVRFQVAIGTAKGIAYLHEECRCCILHCDIKPENILLDSDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELISGRRNVETPPSAEKWFFPPWAAQQIIEGNVAAVVDKKLGSVYSIDEAGRIALVAVWCIQDDEAMRPTMNIVVKMLEGLVEVTVPPPPKMLQALVTGESFHGVKGDSENEVSSVGSLSGGNLEVSTADSESCIGDASSPLDFNVNVR* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1873 826 Gene3D - 19 150 IPR036426 -
Lja3g1873 826 ProSiteProfiles Protein kinase domain profile. 488 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1873 826 SUPERFAMILY Protein kinase-like (PK-like) 470 756 IPR011009 -
Lja3g1873 826 PIRSF SRK 1 809 IPR024171 GO:0004674
Lja3g1873 826 SMART serkin_6 488 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1873 826 Pfam D-mannose binding lectin 73 168 IPR001480 -
Lja3g1873 826 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Lja3g1873 826 ProSiteProfiles Bulb-type lectin domain profile. 22 151 IPR001480 -
Lja3g1873 826 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 8 814 - -
Lja3g1873 826 Gene3D Transferase(Phosphotransferase) domain 1 563 766 - -
Lja3g1873 826 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Lja3g1873 826 Pfam Protein kinase domain 491 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1873 826 CDD PAN_AP_plant 338 420 - -
Lja3g1873 826 CDD B_lectin 31 153 IPR001480 -
Lja3g1873 826 Gene3D Phosphorylase Kinase; domain 1 460 562 - -
Lja3g1873 826 SMART blect_4 29 153 IPR001480 -
Lja3g1873 826 Pfam S-locus glycoprotein domain 206 318 IPR000858 GO:0048544
Lja3g1873 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 211 IPR036426 -
Lja3g1873 826 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-2 8 814 - -
Lja3g1873 826 CDD STKc_IRAK 494 758 - -
Lja3g1873 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1873 Lja-Chr3 21403421 21405931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1873 478 765 Receptor kinase-like Gene Family AT5G20050 48.039 3.11e-83 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja3g1873 Pkinase 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1873 - - lja:Lj0g3v0252549.1 1577.76