Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1871 ATGGGAGGTTGCTGTTGTTCTGCTAGAAAACCTCACCTGCATGGAACACCAGTGTACTACTATTGTCCACCGACTTTAGAAGAGCGTCAGTATTTGACCTCCAATGATGGCGCGGCTGCTGCTGGATTGCTGGTTAACTTGAACCTGGAATCATCCACACCTGATACTTACCGGGCCCCTCCCGCACCTCTGCCTTATGATATAGTCCTCGGAGGTCCTGCCTCAACAGACTCGGAGTCAGGCAGAGAAACAGTCAGTGCTAGTAGTTTTGAAACTTTGATTACATGTGAAGATCTCGAAGAATCTGACGGTAAAGCTCAAGTTAAATTTGCACCTATATCTCCAAGGAATGCAGAACTATCAAAATCGAACAAATCTCATACGCTAGTGGCAGAAGAAGAGGACGGGTGTCCAATTTGTCTTGAAGAATATGATGGTGAGAATCCTAAAATTCTGACAAAGTGTGAACACCATTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCGTGTCCTATATGTGATCAGTTGTTTTGCAAGAGTGGCAGTGGCTTGCTAAATGCGTGA 576 0.4514 MGGCCCSARKPHLHGTPVYYYCPPTLEERQYLTSNDGAAAAGLLVNLNLESSTPDTYRAPPAPLPYDIVLGGPASTDSESGRETVSASSFETLITCEDLEESDGKAQVKFAPISPRNAELSKSNKSHTLVAEEEDGCPICLEEYDGENPKILTKCEHHFHLSCILEWMERSDSCPICDQLFCKSGSGLLNA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1871 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 179 - -
Lja3g1871 191 Pfam Ring finger domain 137 177 IPR001841 -
Lja3g1871 191 SUPERFAMILY RING/U-box 129 183 - -
Lja3g1871 191 SMART ring_2 137 177 IPR001841 -
Lja3g1871 191 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Lja3g1871 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 179 - -
Lja3g1871 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1871 Lja-Chr3 21376590 21381323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1871 1 179 C3H Transcription Factor Family AT4G00335 59.341 7.48e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1871 - - gmx:100804435 314.309