Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1869 ATGACAAGTCCTTATGACCGCAGCCAGAATCCCAGCTCCGGTCACCGGAGCACGCCGGACCGCAGCACGCGCTCTTCCGGATACGCCTCTTCCGGGTTCAGAACTCCTCAGCGACCGACACCCTCCTCTGGCGGCCAGAACCCCATGGCCGCCGCCGCCAGGTCAGTCGTCGGGCTGTTCACCGCTTGCTTCACGCCGCCGGAGTCCAACAACTCCAAGAGCGTCACGGATTCCGAGGAGTTCAAATCTACCTCAGTTGAATCGAATCCTTCAAGAGCTGGTAGTCGGAGAGGGAGTGGCTCAAATCGAGGTAACCACGGCAGTTCACACAACTCAATTCATGGGAAAGAGCCTGGCATTGTGAAGTTCACCATGGAGGAAATCATCAAAGTCACAAGAAACTTCTCACCTTCTTTTAAGATTGGCCAAGGTGGTTTTGGGACGGTTTACAAGGCCAAACTCCAGGATGGAACTGTTGTTGCAGTAAAGCGTGCTAAGAAGAGCGTACATGAGAAGCATTTGGGAGTGGAGTTCCAGAGCGAGGTCCAAACATTATCACGGATTGAACATTTGAACTTGGTCAGGTTCTATGGATTTTCAGAGCAAGGGGATGAAAGAATTATTGTTGTGGAGTATGTTCCAAATGGAACCCTTAGAGAACATTTAGATTGCATTCATGGAAGCATTCTGGACCTCGCCTCTCGTCTAGACATTGCCATTGATGTGGCTCATGCTGTTACCTATCTTCATATGTATATAGATCATCCTATCATCCATAGAGACATAAAATCTTCCAACATTCTCCTCACTGAGCATTTACGCGCTAAAGTAGCAGACTTTGGTTTTGCTAGACAAGCAGCTGACAGTGACTCTGGCATGACCCATGTTTCCACCCAAGTTAAAGGAACAGCTGGCTACTTGGACCCTGAATACTTGAAAACATATCAACTAACTGAAAAGAGTGATGTCTATTCATTTGGTGTTTTGCTTGTTGAAATTGTCACAGGAAGACGTCCCATAGAACCCAAGTTCGAACTCCGGGAGCGAATAACAGCAAAATGGGCTATAAAGAAGTTTATAGAGGGAGATTCCATCTTAGTCTTGGATCCAAAACTGGATCAGACTGCAGCAAATAGTTTAGCCCTAGAGAAGATACTTGAACTAGCTTTACAATGCTTGGCTCCACATAGACAAAACAGGCCTTCTATGAAGAGATGTGCTGAGATCCTTTGGACTATTCGCAAGGATTTCCGAGAGCAATCAGCTGCAAACTTTCGCTCATTTTCCACTACTTCCCAAAGGAGCAACTCAGTGAAAGAGTGA 1323 0.4701 MTSPYDRSQNPSSGHRSTPDRSTRSSGYASSGFRTPQRPTPSSGGQNPMAAAARSVVGLFTACFTPPESNNSKSVTDSEEFKSTSVESNPSRAGSRRGSGSNRGNHGSSHNSIHGKEPGIVKFTMEEIIKVTRNFSPSFKIGQGGFGTVYKAKLQDGTVVAVKRAKKSVHEKHLGVEFQSEVQTLSRIEHLNLVRFYGFSEQGDERIIVVEYVPNGTLREHLDCIHGSILDLASRLDIAIDVAHAVTYLHMYIDHPIIHRDIKSSNILLTEHLRAKVADFGFARQAADSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVEIVTGRRPIEPKFELRERITAKWAIKKFIEGDSILVLDPKLDQTAANSLALEKILELALQCLAPHRQNRPSMKRCAEILWTIRKDFREQSAANFRSFSTTSQRSNSVKE* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1869 440 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Lja3g1869 440 PANTHER RECEPTOR-LIKE PROTEIN 55 22 429 - -
Lja3g1869 440 Gene3D Phosphorylase Kinase; domain 1 97 212 - -
Lja3g1869 440 CDD STKc_IRAK 141 410 - -
Lja3g1869 440 MobiDBLite consensus disorder prediction 64 112 - -
Lja3g1869 440 SMART serkin_6 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1869 440 SUPERFAMILY Protein kinase-like (PK-like) 112 414 IPR011009 -
Lja3g1869 440 MobiDBLite consensus disorder prediction 1 51 - -
Lja3g1869 440 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 2 22 429 - -
Lja3g1869 440 MobiDBLite consensus disorder prediction 63 117 - -
Lja3g1869 440 ProSiteProfiles Protein kinase domain profile. 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1869 440 Pfam Protein kinase domain 140 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1869 440 MobiDBLite consensus disorder prediction 1 49 - -
Lja3g1869 440 Gene3D Transferase(Phosphotransferase) domain 1 213 437 - -
Lja3g1869 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1869 Lja-Chr3 21343790 21346546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1869 123 403 Receptor kinase-like Gene Family AT1G79620 46.667 2.08e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lja3g1869 Pkinase 2.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1869 - - gmx:100305435 652.129