Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1866 ATGGGTTTCCCGGTGGGTTACGCGGAGGTCTTCTTCCCCAACCTCTTCCTCCACACCTTAGCTTTCCTCGGCCATCTCCGAAACCTCATCTTCCTCCTCTTCCACTTCCTCGGCCTCTCCGACTTCCTTGAAACCGAGGTTTCCTGGCCCGACCCAAACGGCGCCACCCTTCCACCCGACCCGGCGCGGTCCCCCTCCATGTCGGCGGTCCTGATCCGGGAGCTGCTGCCGGTGGCGAGGTTCGGCGAGGCAGAGAGGGAGGAGGGGAACTGCGCGGTGTGCTTGTTCGAATTCTCCGAGGAGGAGGAGATCCGGTGCTTGAGGAACTGCAAGCACATTTTCCACCGGGGATGTGTGGACCGTTGGATCGATCATGATCAGAAAACTTGCCCACTTTGTAGGACCCCCTTTGTCCCTGATGATATGCTTGATGAGTATAATCAACGCCTCTGGGATGCTTCTGGTGTTACTGAGTTTTATGGAGGAGACTATGCTTCCTCCTTCTGA 507 0.574 MGFPVGYAEVFFPNLFLHTLAFLGHLRNLIFLLFHFLGLSDFLETEVSWPDPNGATLPPDPARSPSMSAVLIRELLPVARFGEAEREEGNCAVCLFEFSEEEEIRCLRNCKHIFHRGCVDRWIDHDQKTCPLCRTPFVPDDMLDEYNQRLWDASGVTEFYGGDYASSF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1866 168 Pfam Ring finger domain 90 134 IPR001841 -
Lja3g1866 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 141 IPR013083 -
Lja3g1866 168 SMART ring_2 91 133 IPR001841 -
Lja3g1866 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 161 - -
Lja3g1866 168 PANTHER BRH1 RING FINGER PROTEIN 1 161 - -
Lja3g1866 168 SUPERFAMILY RING/U-box 70 140 - -
Lja3g1866 168 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1866 Lja-Chr3 21302174 21303115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1866 1 167 C3H Transcription Factor Family AT1G63840 50.000 1.02e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1866 K16281 - gmx:100500261 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3069 1 37235481 37236467 Lja3g1866 3 21302174 21303115 PCT